SMTL ID : 3pfr.2 (1 other biounit)

Crystal structure of D-Glucarate dehydratase related protein from Actinobacillus Succinogenes complexed with D-Glucarate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 7 residues within 4Å: Chain A: K.206, D.236, N.238, E.261, D.262, N.290 Ligands: GKR.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.236, A:E.261, H2O.216 MG.3: 5 residues within 4Å: Chain B: K.206, D.236, E.261, N.290 Ligands: GKR.4 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.236, B:E.261, H2O.408

2 x GKR: D-GLUCARATE(Non-covalent)

GKR.2: 16 residues within 4Å: Chain A: N.28, H.33, Y.151, F.153, K.206, K.208, D.236, N.238, E.261, N.290, H.340, S.341, N.342, H.369, R.423 Ligands: MG.1 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:N.28, A:Y.151, A:Y.151, A:K.208, A:N.238, A:E.261, A:S.341, A:N.342, A:R.423, A:R.423 Water bridges: A:K.206, A:K.206, A:H.369 Salt bridges: A:H.33, A:K.206, A:K.208, A:H.340, A:H.369, A:R.423 GKR.4: 16 residues within 4Å: Chain B: N.28, H.33, Y.151, F.153, K.206, K.208, D.236, N.238, E.261, N.290, H.340, S.341, N.342, H.369, R.423 Ligands: MG.3 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:N.28, B:Y.151, B:Y.151, B:K.208, B:N.238, B:S.341, B:N.342, B:R.423, B:R.423 Water bridges: B:N.290, B:S.341, B:H.369 Salt bridges: B:H.33, B:K.206, B:K.208, B:K.208, B:H.340, B:H.369, B:R.423

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fedorov, A.A. et al., Crystal structure of D-Glucarate dehydratase related protein from Actinobacillus Succinogenes complexed with D-Glucarate. To be Published

Release Date

2011-11-02

Peptides

Mandelate racemase/muconate lactonizing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Mandelate racemase/muconate lactonizing protein

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