SMTL ID : 3n6m.1

Crystal structure of EV71 RdRp in complex with GTP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 3 residues within 4Å: Chain A: H.271, H.273, C.282 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.271, A:H.273, A:C.282, H2O.6

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 13 residues within 4Å: Chain A: K.159, R.163, K.167, R.174, L.175, Y.234, S.235, G.236, Y.237, D.238, S.289, G.290, D.329 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:K.61, A:R.174, A:L.175, A:L.175, A:L.175, A:Y.234, A:G.236, A:D.238, A:D.238, A:S.289 Water bridges: A:G.236, A:Y.237, A:Y.237, A:N.298 Salt bridges: A:R.163, A:K.167, A:K.167, A:K.167, A:R.174 pi-Cation interactions: A:R.174, A:R.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Structures of EV71 RNA-dependent RNA polymerase in complex with substrate and analogue provide a drug target against the hand-foot-and-mouth disease pandemic in China. Protein Cell (2010)

Release Date

2011-06-15

Peptides

RNA-dependent RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-dependent RNA polymerase

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