SMTL ID : 3nd6.1

Crystal structure of phosphopantetheine adenylyltransferase (PPAT) in complex with ATP from Enterococcus faecalis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 18 residues within 4Å: Chain A: F.7, P.8, G.9, S.10, G.17, H.18, L.21, R.89, G.90, R.92, D.96, E.100, A.121, Y.125, V.128, S.129, S.130, S.131 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.10, A:R.89, A:G.90, A:R.92, A:E.100, A:E.100, A:V.128, A:S.130, A:S.131, A:S.131 Water bridges: A:T.15, A:R.89, A:R.89, A:S.130, A:S.130 Salt bridges: A:H.18, A:H.18, A:R.92 pi-Cation interactions: A:R.92 ATP.2: 18 residues within 4Å: Chain B: F.7, P.8, G.9, S.10, F.11, G.17, H.18, L.21, R.89, G.90, D.96, E.100, A.121, Y.125, V.128, S.129, S.130, S.131 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:S.10, B:F.11, B:R.89, B:G.90, B:E.100, B:Y.125, B:S.130, B:S.131, B:S.131 Water bridges: B:S.10, B:D.12, B:T.15, B:H.18, B:R.89, B:S.129 Salt bridges: B:H.18 ATP.3: 19 residues within 4Å: Chain C: F.7, P.8, G.9, S.10, F.11, G.17, H.18, L.21, R.89, G.90, R.92, D.96, E.100, A.121, Y.125, V.128, S.129, S.130, S.131 19 PLIP interactions: 19 interactions with chain C Hydrogen bonds: C:S.10, C:S.10, C:F.11, C:R.89, C:G.90, C:E.100, C:E.100, C:V.128, C:S.130, C:S.131, C:S.131 Water bridges: C:S.10, C:S.10, C:S.129, C:S.129, C:S.130, C:S.130 Salt bridges: C:H.18, C:H.18 ATP.4: 19 residues within 4Å: Chain D: F.7, P.8, G.9, S.10, F.11, G.17, H.18, L.21, R.89, G.90, R.92, D.96, E.100, A.121, Y.125, V.128, S.129, S.130, S.131 17 PLIP interactions: 17 interactions with chain D Hydrogen bonds: D:S.10, D:S.10, D:F.11, D:R.89, D:G.90, D:E.100, D:V.128, D:S.131 Water bridges: D:H.18, D:R.89, D:S.130, D:S.130, D:S.130, D:S.130, D:S.130 Salt bridges: D:H.18 pi-Cation interactions: D:R.92 ATP.5: 18 residues within 4Å: Chain E: F.7, P.8, G.9, S.10, F.11, G.17, H.18, L.21, R.89, G.90, D.96, E.100, A.121, Y.125, V.128, S.129, S.130, S.131 13 PLIP interactions: 13 interactions with chain E Hydrogen bonds: E:S.10, E:S.10, E:F.11, E:G.90, E:E.100, E:V.128, E:S.130, E:S.131 Water bridges: E:R.92, E:S.130, E:S.130 Salt bridges: E:H.18, E:H.18 ATP.6: 17 residues within 4Å: Chain F: F.7, G.9, S.10, F.11, G.17, H.18, L.21, R.89, G.90, D.96, E.100, A.121, Y.125, V.128, S.129, S.130, S.131 19 PLIP interactions: 19 interactions with chain F Hydrogen bonds: F:S.10, F:F.11, F:R.89, F:G.90, F:E.100, F:E.100, F:V.128, F:S.130, F:S.131 Water bridges: F:T.15, F:R.89, F:R.89, F:R.92, F:R.92, F:V.128, F:S.130, F:S.130 Salt bridges: F:H.18, F:H.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoon, H.J. et al., Crystal structure of phosphopantetheine adenylyltransferase from Enterococcus faecalis in the ligand-unbound state and in complex with ATP and pantetheine. Mol.Cells (2011)

Release Date

2011-06-22

Peptides

Phosphopantetheine adenylyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Phosphopantetheine adenylyltransferase

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