SMTL ID : 3nd7.1

Crystal structure of phosphopantetheine adenylyltransferase from Enterococcus faecalis in the ligand-unbound state and in complex with ATP and pantetheine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-hexamer

Ligands

6 x PNY: (2R)-2,4-dihydroxy-3,3-dimethyl-N-{3-oxo-3-[(2-sulfanylethyl)amino]propyl}butanamide(Non-covalent)

PNY.1: 10 residues within 4Å: Chain A: G.9, S.10, Q.73, L.74, T.75, Y.99, M.106, N.107 Chain C: E.135, V.136 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:S.10, A:T.75, A:T.75, C:E.135, C:E.135 Water bridges: A:N.107, A:N.107 PNY.2: 10 residues within 4Å: Chain B: F.37, Q.73, L.74, T.75, Y.99, I.103, M.106, N.107 Chain F: E.135, F.139 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain F Hydrogen bonds: B:T.75, B:T.75, B:T.75, F:E.135, F:E.135 Water bridges: B:V.76 Hydrophobic interactions: F:F.139 PNY.3: 13 residues within 4Å: Chain C: P.8, T.72, Q.73, L.74, T.75, R.89, Y.99, I.103, M.106, N.107 Chain E: L.132, E.135, F.139 10 PLIP interactions: 8 interactions with chain C, 2 interactions with chain E Hydrophobic interactions: C:P.8, C:I.103, E:F.139 Hydrogen bonds: C:T.75, C:T.75, C:R.89, C:Y.99, E:E.135 Water bridges: C:V.76, C:N.107 PNY.4: 11 residues within 4Å: Chain B: L.132, E.135, F.139 Chain D: P.8, Q.73, L.74, T.75, Y.99, I.103, M.106, N.107 12 PLIP interactions: 10 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: D:P.8, B:F.139 Hydrogen bonds: D:T.75, D:T.75, D:Y.99, D:Y.99, D:Y.99, B:E.135 Water bridges: D:R.89, D:N.107, D:N.107, D:N.107 PNY.5: 14 residues within 4Å: Chain A: L.132, E.135, V.136, F.139 Chain E: P.8, G.9, Q.73, L.74, T.75, R.89, Y.99, I.103, M.106, N.107 9 PLIP interactions: 7 interactions with chain E, 2 interactions with chain A Hydrophobic interactions: E:P.8, A:F.139 Hydrogen bonds: E:T.75, E:T.75, E:R.89, E:Y.99, E:Y.99, A:E.135 Water bridges: E:N.107 PNY.6: 13 residues within 4Å: Chain D: L.132, E.135 Chain F: P.8, G.9, T.72, Q.73, L.74, T.75, R.89, Y.99, I.103, M.106, N.107 10 PLIP interactions: 8 interactions with chain F, 2 interactions with chain D Hydrophobic interactions: F:P.8 Hydrogen bonds: F:T.75, F:T.75, F:Y.99, F:Y.99, D:E.135, D:E.135 Water bridges: F:R.89, F:N.107, F:N.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoon, H.J. et al., Crystal structure of phosphopantetheine adenylyltransferase from Enterococcus faecalis in the ligand-unbound state and in complex with ATP and pantetheine. Mol.Cells (2011)

Release Date

2011-06-22

Peptides

Phosphopantetheine adenylyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Phosphopantetheine adenylyltransferase

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