SMTL ID : 3ndy.1

The structure of the catalytic and carbohydrate binding domain of endoglucanase D from Clostridium cellulovorans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-4-4-mer

Ligands

4 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.1: 8 residues within 4Å: Chain A: H.104, H.105, Y.226, M.233, E.272, W.305, E.316, F.318 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.104, A:E.316 Water bridges: A:N.148, A:E.149, A:E.149, A:E.149, A:E.149 Salt bridges: A:E.272 BTB.2: 9 residues within 4Å: Chain C: H.104, H.105, E.149, Y.226, M.233, E.272, W.305, E.316, F.318 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:H.104, C:E.149, C:E.316 Water bridges: C:N.148, C:N.307, C:E.316 Salt bridges: C:E.272 BTB.3: 9 residues within 4Å: Chain E: H.104, H.105, E.149, Y.226, M.233, E.272, W.305, E.316, F.318 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:H.104, E:H.105, E:E.149 Water bridges: E:D.30, E:N.148, E:N.307 Salt bridges: E:E.272, E:E.316 BTB.4: 9 residues within 4Å: Chain G: H.104, H.105, E.149, Y.226, M.233, E.272, W.305, E.316, F.318 11 PLIP interactions: 11 interactions with chain G Hydrogen bonds: G:H.104, G:N.148, G:E.149, G:E.316 Water bridges: G:D.30, G:R.151, G:H.224, G:N.307, G:N.307 Salt bridges: G:E.272, G:E.316

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bianchetti, C.M. et al., The structure of the catalytic and carbohydrate binding domain of endoglucanase D. To be Published

Release Date

2010-09-08

Peptides

Endoglucanase D: ACEG
Endoglucanase D: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

E
C

G
D

B
E

D
F

F
G

H
H

Endoglucanase D

Endoglucanase D

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