SMTL ID : 3ndz.1

The structure of the catalytic and carbohydrate binding domain of endoglucanase D from Clostridium cellulovorans bound to cellotriose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

hetero-4-4-mer

Ligands

6 x BGC- BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-BGC-BGC.1: 13 residues within 4Å: Chain A: N.27, W.38, H.104, H.105, N.148, E.149, Y.226, M.233, E.272, W.305, N.307, E.316, F.318 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.27 BGC-BGC-BGC.2: 13 residues within 4Å: Chain A: S.201, A.202, M.203, S.204, S.252, E.253, A.256 Chain E: A.202, M.203, S.204, M.225, S.227, E.253 11 PLIP interactions: 8 interactions with chain E, 3 interactions with chain A Hydrogen bonds: E:S.227, E:E.253, E:E.253 Water bridges: E:W.159, E:S.201, E:H.224, E:H.224, E:E.253, A:Y.245, A:S.249, A:S.252 BGC-BGC-BGC.3: 12 residues within 4Å: Chain C: N.27, W.38, H.104, H.105, N.148, E.149, Y.226, M.233, E.272, W.305, N.307, E.316 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.27 BGC-BGC-BGC.4: 12 residues within 4Å: Chain C: S.201, A.202, M.203, S.252, E.253, A.256 Chain G: A.202, M.203, S.204, M.225, S.227, E.253 8 PLIP interactions: 6 interactions with chain G, 2 interactions with chain C Hydrogen bonds: G:S.227, G:E.253, G:E.253 Water bridges: G:S.201, G:H.224, G:H.224, C:Y.245, C:S.252 BGC-BGC-BGC.5: 12 residues within 4Å: Chain E: N.27, W.38, H.104, H.105, N.148, E.149, Y.226, M.233, E.272, W.305, N.307, E.316 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.27 BGC-BGC-BGC.6: 12 residues within 4Å: Chain G: N.27, W.38, H.104, H.105, N.148, E.149, Y.226, M.233, E.272, W.305, N.307, E.316 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bianchetti, C.M. et al., The structure of the catalytic and carbohydrate binding domain of endoglucanase D bound to cellotriose. To be Published

Release Date

2011-06-29

Peptides

Endoglucanase D: ACEG
Endoglucanase D: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

E
C

G
D

B
E

D
F

F
G

H
H

Endoglucanase D

Endoglucanase D

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