SMTL ID : 3nex.1

V30M mutant human transthyretin (TTR) complexed with GC-24 (V30M:GC-24)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: E.57, D.90 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.90 GOL.3: 3 residues within 4Å: Chain B: E.57, D.90, S.91 No protein-ligand interaction detected (PLIP) GOL.5: 2 residues within 4Å: Chain C: E.57, D.90 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.90 GOL.7: 3 residues within 4Å: Chain D: E.57, D.90, S.91 No protein-ligand interaction detected (PLIP)

4 x G24: [4-(3-BENZYL-4-HYDROXYBENZYL)-3,5-DIMETHYLPHENOXY]ACETIC ACID(Non-covalent)

G24.2: 16 residues within 4Å: Chain A: M.4, K.6, L.8, E.45, A.99, A.100, L.101, T.110 Chain C: L.8, E.45, A.99, L.101, S.108, T.109, T.110 Ligands: G24.6 10 PLIP interactions: 7 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:K.6, A:L.8, A:A.99, A:L.101, C:L.8, C:L.101 Hydrogen bonds: A:K.6, A:E.45 Water bridges: A:L.101 Salt bridges: C:K.6 G24.4: 17 residues within 4Å: Chain B: K.6, L.8, E.45, A.99, A.100, L.101, S.108, T.109, T.110 Chain D: M.4, K.6, L.8, E.45, A.99, A.100, L.101 Ligands: G24.8 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain D Hydrophobic interactions: B:K.6, B:L.8, B:A.99, B:L.101, D:L.8, D:A.99, D:L.101 Salt bridges: B:K.6 Hydrogen bonds: D:K.6 G24.6: 16 residues within 4Å: Chain A: L.8, E.45, A.99, L.101, S.108, T.109, T.110 Chain C: M.4, K.6, L.8, E.45, A.99, A.100, L.101, T.110 Ligands: G24.2 10 PLIP interactions: 7 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:K.6, C:L.8, C:A.99, C:L.101, A:L.8, A:L.101 Hydrogen bonds: C:K.6, C:E.45 Water bridges: C:L.101 Salt bridges: A:K.6 G24.8: 17 residues within 4Å: Chain B: M.4, K.6, L.8, E.45, A.99, A.100, L.101 Chain D: K.6, L.8, E.45, A.99, A.100, L.101, S.108, T.109, T.110 Ligands: G24.4 9 PLIP interactions: 4 interactions with chain B, 5 interactions with chain D Hydrophobic interactions: B:L.8, B:A.99, B:L.101, D:K.6, D:L.8, D:A.99, D:L.101 Hydrogen bonds: B:K.6 Salt bridges: D:K.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trivella, D.B. et al., The binding of synthetic triiodo l-thyronine analogs to human transthyretin: molecular basis of cooperative and non-cooperative ligand recognition. J.Struct.Biol. (2011)

Release Date

2010-11-24

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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