SMTL ID : 3niq.1

Crystal structure of Pseudomonas aeruginosa guanidinopropionase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-hexamer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: N.50, R.51 Chain B: H.56, R.59 Chain E: R.16, F.17, N.63, L.64, S.66, L.67 5 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, 1 interactions with chain E Hydrogen bonds: B:H.56, B:R.59, A:N.50, A:N.50, E:N.63 GOL.6: 10 residues within 4Å: Chain A: R.16, F.17, N.63, L.64, S.66, L.67 Chain C: N.50, R.51 Chain D: H.56, R.59 5 PLIP interactions: 2 interactions with chain D, 1 interactions with chain A, 2 interactions with chain C Hydrogen bonds: D:H.56, D:R.59, A:N.63, C:N.50, C:N.50 GOL.11: 10 residues within 4Å: Chain C: R.16, F.17, N.63, L.64, S.66, L.67 Chain E: N.50, R.51 Chain F: H.56, R.59 4 PLIP interactions: 1 interactions with chain F, 1 interactions with chain C, 2 interactions with chain E Hydrogen bonds: F:R.59, C:N.63, E:N.50, E:N.50

12 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: H.126, D.148, D.152, D.240 Ligands: MN.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.126, A:D.148, A:D.152, A:D.240, H2O.2 MN.3: 5 residues within 4Å: Chain A: D.148, H.150, D.240, D.242 Ligands: MN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.148, A:H.150, A:D.240, A:D.242, H2O.2 MN.4: 5 residues within 4Å: Chain B: H.126, D.148, D.152, D.240 Ligands: MN.5 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.126, B:D.148, B:D.152, B:D.240, H2O.7 MN.5: 5 residues within 4Å: Chain B: D.148, H.150, D.240, D.242 Ligands: MN.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.148, B:H.150, B:D.240, B:D.242, H2O.7 MN.7: 5 residues within 4Å: Chain C: H.126, D.148, D.152, D.240 Ligands: MN.8 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.126, C:D.148, C:D.152, C:D.240, H2O.9 MN.8: 5 residues within 4Å: Chain C: D.148, H.150, D.240, D.242 Ligands: MN.7 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.148, C:H.150, C:D.240, C:D.242, H2O.9 MN.9: 5 residues within 4Å: Chain D: H.126, D.148, D.152, D.240 Ligands: MN.10 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.126, D:D.148, D:D.152, D:D.240, H2O.14 MN.10: 5 residues within 4Å: Chain D: D.148, H.150, D.240, D.242 Ligands: MN.9 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.148, D:H.150, D:D.240, D:D.242, H2O.14 MN.12: 5 residues within 4Å: Chain E: H.126, D.148, D.152, D.240 Ligands: MN.13 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.126, E:D.148, E:D.152, E:D.240, H2O.17 MN.13: 5 residues within 4Å: Chain E: D.148, H.150, D.240, D.242 Ligands: MN.12 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.148, E:H.150, E:D.240, E:D.242, H2O.17 MN.14: 5 residues within 4Å: Chain F: H.126, D.148, D.152, D.240 Ligands: MN.15 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.126, F:D.148, F:D.152, F:D.240, H2O.21 MN.15: 5 residues within 4Å: Chain F: D.148, H.150, D.240, D.242 Ligands: MN.14 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:D.148, F:H.150, F:D.240, F:D.242, H2O.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, S.J. et al., Crystal structures of Pseudomonas aeruginosa guanidinobutyrase and guanidinopropionase, members of the ureohydrolase superfamily. J.Struct.Biol. (2011)

Release Date

2011-06-01

Peptides

3-guanidinopropionase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

3-guanidinopropionase

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