SMTL ID : 3nja.1 (3 other biounits)

The crystal structure of the PAS domain of a GGDEF family protein from Chromobacterium violaceum ATCC 12472.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

homo-tetramer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: E.98 Chain B: W.21, L.23, L.30, W.32, E.51, Y.54 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.98, B:W.32, B:E.51 GOL.2: 7 residues within 4Å: Chain A: W.21, L.30, W.32, Y.54 Chain B: Y.84, E.98, V.117 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:W.32, B:Y.84, B:E.98 GOL.4: 7 residues within 4Å: Chain C: E.98 Chain D: W.21, L.23, L.30, W.32, E.51, Y.54 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:W.32, D:E.51, C:E.98 GOL.5: 7 residues within 4Å: Chain C: W.21, L.30, W.32, Y.54 Chain D: Y.84, E.98, V.117 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:W.32, D:Y.84, D:E.98

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain B: P.79, R.99, H.101 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.99, B:H.101 SO4.6: 3 residues within 4Å: Chain D: P.79, R.99, H.101 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:R.99, D:H.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of the PAS domain of a GGDEF family protein from Chromobacterium violaceum ATCC 12472. To be Published

Release Date

2010-08-18

Peptides

Probable GGDEF family protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Probable GGDEF family protein

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