SMTL ID : 3nnb.1

Crystal structure of an alginate lyase (BACOVA_01668) from Bacteroides ovatus at 1.60 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: E.182, N.183, S.184, F.187 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.182

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 9 residues within 4Å: Chain A: Y.69, W.70, R.84, R.161, A.163, N.220, H.222, R.271, Y.277 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.69 Hydrogen bonds: A:N.220, A:Y.277 Water bridges: A:W.70, A:Q.150, A:R.161, A:N.221, A:R.271, A:R.271 Salt bridges: A:R.84, A:R.161, A:H.222, A:H.222, A:R.271, A:R.271

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: T.273, G.276, Y.277, F.280, K.339 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.273, A:T.273, A:K.339 Water bridges: A:T.273, A:Y.277, A:Y.277, A:E.335 GOL.4: 5 residues within 4Å: Chain A: A.10, K.13, S.293, F.352, F.353 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.290, A:S.293 Water bridges: A:A.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of an alginate lyase (BACOVA_01668) from Bacteroides ovatus at 1.60 A resolution. To be published

Release Date

2010-10-06

Peptides

alginate lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

alginate lyase

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