SMTL ID : 3npp.1 (1 other biounit)

Crystal structure of a Pfam DUF1093 family protein (BSU39620) from Bacillus subtilis at 2.15 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: F.46, F.47, V.67, E.68, T.69, W.70 Chain B: P.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.47, A:E.68 GOL.2: 2 residues within 4Å: Chain A: K.40 Chain B: G.1 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.40, B:G.1 Water bridges: A:Q.10, A:E.42 GOL.3: 2 residues within 4Å: Chain A: K.74, E.76 1 PLIP interactions: 1 interactions with chain A Water bridges: A:F.75 GOL.4: 5 residues within 4Å: Chain A: K.50, L.52, R.53, W.70, E.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.50, A:R.53 GOL.5: 2 residues within 4Å: Chain A: Q.15, Y.57 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.15 Water bridges: A:Q.15, A:Y.57 GOL.11: 5 residues within 4Å: Chain A: P.5 Chain B: F.46, F.47, E.68, W.70 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:F.47, B:E.68 Water bridges: B:F.47, B:W.70 GOL.12: 3 residues within 4Å: Chain B: Y.57, F.75, K.87 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.57

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 1 residues within 4Å: Chain A: G.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.1, A:G.1 SO4.7: 4 residues within 4Å: Chain A: H.22, S.24, P.25, G.26 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.26 Salt bridges: A:H.22 SO4.8: 3 residues within 4Å: Chain A: Q.9, K.61 Ligands: SO4.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.9 Water bridges: A:D.11, A:K.59 Salt bridges: A:K.61 SO4.9: 3 residues within 4Å: Chain A: K.61, K.63 Ligands: SO4.8 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.61, A:K.61 Salt bridges: A:K.61, A:K.63 SO4.10: 2 residues within 4Å: Chain A: R.21, E.29 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.21 SO4.13: 4 residues within 4Å: Chain A: F.6, H.8 Chain B: K.65, Y.66 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:F.6 Water bridges: A:H.8, A:H.8, B:K.65, B:K.65 Salt bridges: A:H.8, B:K.65 SO4.14: 4 residues within 4Å: Chain B: H.22, S.24, P.25, G.26 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.26 Salt bridges: B:H.22 SO4.15: 2 residues within 4Å: Chain B: G.1, R.2 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.2 Salt bridges: B:R.2 SO4.16: 1 residues within 4Å: Chain B: R.21 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a Pfam DUF1093 family protein (BSU39620) from Bacillus subtilis at 2.15 A resolution. To be published

Release Date

2010-07-28

Peptides

Pfam DUF1093 family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pfam DUF1093 family protein

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