SMTL ID : 3npp.2 (1 other biounit)

Crystal structure of a Pfam DUF1093 family protein (BSU39620) from Bacillus subtilis at 2.15 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-hexamer

Ligands

21 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: F.46, F.47, V.67, E.68, T.69, W.70 Chain B: P.5 Chain E: P.5, I.7 Ligand excluded by PLIP GOL.2: 2 residues within 4Å: Chain A: K.40 Chain B: G.1 Ligand excluded by PLIP GOL.3: 3 residues within 4Å: Chain A: K.74, E.76 Chain E: S.81 Ligand excluded by PLIP GOL.4: 5 residues within 4Å: Chain A: K.50, L.52, R.53, W.70, E.72 Ligand excluded by PLIP GOL.5: 2 residues within 4Å: Chain A: Q.15, Y.57 Ligand excluded by PLIP GOL.11: 8 residues within 4Å: Chain A: P.5 Chain B: F.46, F.47, E.68, W.70 Chain C: Y.66 Chain D: Q.9, K.63 Ligand excluded by PLIP GOL.12: 3 residues within 4Å: Chain B: Y.57, F.75, K.87 Ligand excluded by PLIP GOL.17: 9 residues within 4Å: Chain A: P.5, I.7 Chain C: F.46, F.47, V.67, E.68, T.69, W.70 Chain D: P.5 Ligand excluded by PLIP GOL.18: 2 residues within 4Å: Chain C: K.40 Chain D: G.1 Ligand excluded by PLIP GOL.19: 3 residues within 4Å: Chain A: S.81 Chain C: K.74, E.76 Ligand excluded by PLIP GOL.20: 5 residues within 4Å: Chain C: K.50, L.52, R.53, W.70, E.72 Ligand excluded by PLIP GOL.21: 2 residues within 4Å: Chain C: Q.15, Y.57 Ligand excluded by PLIP GOL.27: 8 residues within 4Å: Chain C: P.5 Chain D: F.46, F.47, E.68, W.70 Chain E: Y.66 Chain F: Q.9, K.63 Ligand excluded by PLIP GOL.28: 3 residues within 4Å: Chain D: Y.57, F.75, K.87 Ligand excluded by PLIP GOL.33: 9 residues within 4Å: Chain C: P.5, I.7 Chain E: F.46, F.47, V.67, E.68, T.69, W.70 Chain F: P.5 Ligand excluded by PLIP GOL.34: 2 residues within 4Å: Chain E: K.40 Chain F: G.1 Ligand excluded by PLIP GOL.35: 3 residues within 4Å: Chain C: S.81 Chain E: K.74, E.76 Ligand excluded by PLIP GOL.36: 5 residues within 4Å: Chain E: K.50, L.52, R.53, W.70, E.72 Ligand excluded by PLIP GOL.37: 2 residues within 4Å: Chain E: Q.15, Y.57 Ligand excluded by PLIP GOL.43: 8 residues within 4Å: Chain A: Y.66 Chain B: Q.9, K.63 Chain E: P.5 Chain F: F.46, F.47, E.68, W.70 Ligand excluded by PLIP GOL.44: 3 residues within 4Å: Chain F: Y.57, F.75, K.87 Ligand excluded by PLIP

27 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 1 residues within 4Å: Chain A: G.1 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: H.22, S.24, P.25, G.26 Ligand excluded by PLIP SO4.8: 11 residues within 4Å: Chain A: Q.9, K.61 Chain C: Q.9, K.61 Chain E: Q.9, K.61 Ligands: SO4.9, SO4.24, SO4.25, SO4.40, SO4.41 Ligand excluded by PLIP SO4.9: 12 residues within 4Å: Chain A: K.61, K.63 Chain C: K.61, K.63 Chain E: K.61, K.63, E.68 Ligands: SO4.8, SO4.24, SO4.25, SO4.40, SO4.41 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain A: R.21, E.29 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain A: F.6, H.8 Chain B: K.65, Y.66 Chain C: W.70 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain B: H.22, S.24, P.25, G.26 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain B: G.1, R.2 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain B: R.21 Chain C: H.22, L.23, S.24 Ligand excluded by PLIP SO4.22: 1 residues within 4Å: Chain C: G.1 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain C: H.22, S.24, P.25, G.26 Ligand excluded by PLIP SO4.24: 11 residues within 4Å: Chain A: Q.9, K.61 Chain C: Q.9, K.61 Chain E: Q.9, K.61 Ligands: SO4.8, SO4.9, SO4.25, SO4.40, SO4.41 Ligand excluded by PLIP SO4.25: 12 residues within 4Å: Chain A: K.61, K.63, E.68 Chain C: K.61, K.63 Chain E: K.61, K.63 Ligands: SO4.8, SO4.9, SO4.24, SO4.40, SO4.41 Ligand excluded by PLIP SO4.26: 2 residues within 4Å: Chain C: R.21, E.29 Ligand excluded by PLIP SO4.29: 5 residues within 4Å: Chain C: F.6, H.8 Chain D: K.65, Y.66 Chain E: W.70 Ligand excluded by PLIP SO4.30: 4 residues within 4Å: Chain D: H.22, S.24, P.25, G.26 Ligand excluded by PLIP SO4.31: 2 residues within 4Å: Chain D: G.1, R.2 Ligand excluded by PLIP SO4.32: 4 residues within 4Å: Chain D: R.21 Chain E: H.22, L.23, S.24 Ligand excluded by PLIP SO4.38: 1 residues within 4Å: Chain E: G.1 Ligand excluded by PLIP SO4.39: 4 residues within 4Å: Chain E: H.22, S.24, P.25, G.26 Ligand excluded by PLIP SO4.40: 11 residues within 4Å: Chain A: Q.9, K.61 Chain C: Q.9, K.61 Chain E: Q.9, K.61 Ligands: SO4.8, SO4.9, SO4.24, SO4.25, SO4.41 Ligand excluded by PLIP SO4.41: 12 residues within 4Å: Chain A: K.61, K.63 Chain C: K.61, K.63, E.68 Chain E: K.61, K.63 Ligands: SO4.8, SO4.9, SO4.24, SO4.25, SO4.40 Ligand excluded by PLIP SO4.42: 2 residues within 4Å: Chain E: R.21, E.29 Ligand excluded by PLIP SO4.45: 5 residues within 4Å: Chain A: W.70 Chain E: F.6, H.8 Chain F: K.65, Y.66 Ligand excluded by PLIP SO4.46: 4 residues within 4Å: Chain F: H.22, S.24, P.25, G.26 Ligand excluded by PLIP SO4.47: 2 residues within 4Å: Chain F: G.1, R.2 Ligand excluded by PLIP SO4.48: 4 residues within 4Å: Chain A: H.22, L.23, S.24 Chain F: R.21 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a Pfam DUF1093 family protein (BSU39620) from Bacillus subtilis at 2.15 A resolution. To be published

Release Date

2010-07-28

Peptides

Pfam DUF1093 family protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Pfam DUF1093 family protein

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