SMTL ID : 3npy.1

Crystal Structure of Tyrosinase from Bacillus megaterium soaked in CuSO4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-dimer

Ligands

4 x CU: COPPER (II) ION(Non-covalent)

CU.1: 5 residues within 4Å: Chain A: H.204, H.208, F.227, H.231 Ligands: CU.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.204, A:H.208, A:H.231, H2O.2 CU.2: 5 residues within 4Å: Chain A: H.42, H.60, H.69, F.227 Ligands: CU.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.42, A:H.60, H2O.2, H2O.2 CU.12: 5 residues within 4Å: Chain B: H.204, H.208, F.227, H.231 Ligands: CU.13 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.204, B:H.208, B:H.231, H2O.5 CU.13: 5 residues within 4Å: Chain B: H.42, H.60, H.69, F.227 Ligands: CU.12 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.42, B:H.60, H2O.5, H2O.5

8 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.13, D.287 Ligands: CL.8, CL.9 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.13, A:D.287 ZN.4: 5 residues within 4Å: Chain A: H.49 Chain B: Q.142, N.144 Ligands: CL.10, CL.11 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.49 ZN.5: 3 residues within 4Å: Chain A: E.95, R.165, V.168 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.95, H2O.3 ZN.6: 1 residues within 4Å: Chain A: D.166 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.166, H2O.4 ZN.7: 1 residues within 4Å: Chain A: H.279 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.279, H2O.4, H2O.4 ZN.14: 4 residues within 4Å: Chain B: H.13, D.287 Ligands: CL.17, CL.18 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.13, B:D.287 ZN.15: 3 residues within 4Å: Chain A: Q.142, N.144 Chain B: H.49 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.49, H2O.7, H2O.7 ZN.16: 2 residues within 4Å: Chain B: I.243, H.279 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.279, H2O.7, H2O.7, H2O.7

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 5 residues within 4Å: Chain A: H.13, D.287, I.288 Ligands: ZN.3, CL.9 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain A: K.9, H.13, D.287 Ligands: ZN.3, CL.8 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain A: G.46, H.49 Ligands: ZN.4, CL.11 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain A: H.49 Chain B: N.144 Ligands: ZN.4, CL.10 Ligand excluded by PLIP CL.17: 5 residues within 4Å: Chain B: K.9, H.13, D.287 Ligands: ZN.14, CL.18 Ligand excluded by PLIP CL.18: 5 residues within 4Å: Chain B: H.13, D.287, I.288 Ligands: ZN.14, CL.17 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sendovski, M. et al., First structures of an active bacterial tyrosinase reveal copper plasticity. J.Mol.Biol. (2011)

Release Date

2010-11-17

Peptides

Tyrosinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosinase

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