SMTL ID : 3nqi.1 (5 other biounits)

Crystal structure of a Putative lipoprotein (BF3042) from Bacteroides fragilis NCTC 9343 at 1.87 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

4 x CD: CADMIUM ION(Non-covalent)

CD.1: 2 residues within 4Å: Chain A: D.163, I.165 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.163, A:I.165, H2O.1, H2O.3, H2O.5 CD.2: 2 residues within 4Å: Chain A: D.76 Ligands: CL.7 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.76, H2O.1, H2O.1, H2O.1, H2O.2 CD.3: 2 residues within 4Å: Chain A: E.139 Ligands: CL.6 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.139, A:E.139 CD.4: 2 residues within 4Å: Chain A: E.121, E.246 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.121, A:E.121, A:E.246, A:E.246, H2O.2

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: I.165, K.214 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: T.138, E.139 Ligands: CD.3 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain A: V.43, T.44, L.45, D.76, P.77 Ligands: CD.2 Ligand excluded by PLIP

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.8: 6 residues within 4Å: Chain A: Y.51, I.80, F.107, S.189, S.190, F.191 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.191 Water bridges: A:G.79, A:F.191 PEG.9: 6 residues within 4Å: Chain A: K.17, D.29, A.30, G.32, F.119, S.120 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.30 PEG.10: 5 residues within 4Å: Chain A: Q.118, F.119, K.243, T.244, A.245 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.118 PEG.11: 4 residues within 4Å: Chain A: Q.220, L.228, E.229, T.233 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.233 Water bridges: A:Q.220

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a Putative lipoprotein (BF3042) from Bacteroides fragilis NCTC 9343 at 1.87 A resolution. To be published

Release Date

2010-08-18

Peptides

Putative lipoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative lipoprotein

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