SMTL ID : 3nqi.4 (5 other biounits)

Crystal structure of a Putative lipoprotein (BF3042) from Bacteroides fragilis NCTC 9343 at 1.87 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

4 x CD: CADMIUM ION(Non-covalent)

CD.1: 3 residues within 4Å: Chain A: E.121, E.246 Ligands: ACT.7 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:E.121, A:E.121, A:E.246, A:E.246, ACT.7 CD.2: 2 residues within 4Å: Chain A: D.76 Ligands: CL.5 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.76, H2O.2, H2O.2, H2O.2 CD.3: 1 residues within 4Å: Chain A: E.139 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.139, A:E.139 CD.4: 1 residues within 4Å: Chain A: E.177 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.177, A:E.177

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 6 residues within 4Å: Chain A: V.43, T.44, L.45, D.76, P.77 Ligands: CD.2 Ligand excluded by PLIP

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 6 residues within 4Å: Chain A: Q.220, L.228, E.229, T.233, I.234, E.235 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.220, A:E.229

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 4 residues within 4Å: Chain A: E.121, A.245, E.246 Ligands: CD.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a Putative lipoprotein (BF3042) from Bacteroides fragilis NCTC 9343 at 1.87 A resolution. To be published

Release Date

2010-08-18

Peptides

Putative lipoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Putative lipoprotein

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