SMTL ID : 3nrj.2 (2 other biounits)

Crystal structure of probable yrbi family phosphatase from pseudomonas syringae pv.phaseolica 1448a complexed with magnesium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: T.49, G.52, R.79 Chain C: L.35 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: L.35 Chain B: T.49, G.52, R.79 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain C: T.49, G.52, R.79 Chain D: L.35 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain B: L.35 Chain D: T.49, G.52, R.79 Ligand excluded by PLIP

4 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.25, D.27, D.118, D.122 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.25, A:D.27, A:D.118, H2O.1, H2O.1, H2O.2 MG.5: 5 residues within 4Å: Chain B: D.25, D.27, D.118, D.122 Ligands: PO4.6 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.25, B:D.27, B:D.118, H2O.3, H2O.4 MG.8: 3 residues within 4Å: Chain C: D.25, D.27, D.118 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.25, C:D.27, C:D.118, H2O.5, H2O.5 MG.11: 3 residues within 4Å: Chain D: D.25, D.27, D.118 6 PLIP interactions: 3 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.25, D:D.27, D:D.118, H2O.6, H2O.7, H2O.8

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 7 residues within 4Å: Chain A: D.25, S.69, G.70, R.71, E.93, K.95, P.121 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.25, A:G.70 Water bridges: A:D.25, A:V.26, A:D.27, A:D.27 Salt bridges: A:K.95 PO4.6: 7 residues within 4Å: Chain B: D.25, S.69, G.70, E.93, K.95, P.121 Ligands: MG.5 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.25, B:G.70, B:E.93 Water bridges: B:V.26, B:D.27, B:D.27 Salt bridges: B:K.95 PO4.9: 7 residues within 4Å: Chain C: D.25, S.69, G.70, R.71, E.93, K.95, P.121 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:D.25, C:G.70 Water bridges: C:D.25, C:D.25, C:D.25, C:V.26, C:D.27, C:D.27 Salt bridges: C:K.95 PO4.12: 6 residues within 4Å: Chain D: D.25, S.69, G.70, E.93, K.95, P.121 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:D.25, D:G.70, D:R.71 Water bridges: D:D.25, D:V.26, D:D.27, D:D.27 Salt bridges: D:K.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of Had Family Hydrolase from Pseudomonas Syringae Pv.Phaseolica 1448A. To be Published

Release Date

2010-07-28

Peptides

PROBABLE YRBI FAMILY PHOSPHATASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
J

C
K

D
L

PROBABLE YRBI FAMILY PHOSPHATASE

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