SMTL ID : 3ny6.1

Catalytic fragment of cholix toxin from vibrio cholerae in complex with inhibitor V30

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: V.49, N.50, R.51, V.171 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.49 Water bridges: A:R.51, A:I.52, A:A.170 GOL.2: 7 residues within 4Å: Chain A: H.24, V.33, F.34, S.197, I.198, S.199, T.200 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.34, A:I.198, A:T.200 Water bridges: A:H.24

1 x V30: 2-[(5,6-dimethyl-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-(2-hydroxyethyl)acetamide(Non-covalent)

V30.3: 10 residues within 4Å: Chain A: H.38, G.39, Y.71, V.72, A.73, V.78, A.79, Y.82, E.159 Ligands: PO4.4 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.71, A:A.73, A:V.78, A:E.159 Hydrogen bonds: A:G.39, A:G.39 pi-Stacking: A:Y.82, A:Y.82

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 5 residues within 4Å: Chain A: H.38, T.40, A.44, I.48 Ligands: V30.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.40 Water bridges: A:A.44 Salt bridges: A:H.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Turgeon, Z. et al., Newly discovered and characterized antivirulence compounds inhibit bacterial mono-ADP-ribosyltransferase toxins. Antimicrob.Agents Chemother. (2011)

Release Date

2010-12-29

Peptides

Cholix toxin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cholix toxin

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