SMTL ID : 3nz2.2 (5 other biounits)

Crystal Structure of Hexapeptide-Repeat containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A from Vibrio cholerae O1 biovar eltor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-hexamer

Ligands

4 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 6 residues within 4Å: Chain A: E.45, R.48, Q.52, C.64, V.65, Q.66 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.45 Hydrogen bonds: A:Q.52, A:V.65 Salt bridges: A:R.48 ACY.7: 4 residues within 4Å: Chain B: Q.124, W.126 Chain C: K.62, H.82 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Salt bridges: C:H.82 Hydrophobic interactions: B:W.126 ACY.11: 5 residues within 4Å: Chain E: R.48, Q.52, C.64, V.65, Q.66 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:Q.52, E:V.65 Salt bridges: E:R.48 ACY.12: 6 residues within 4Å: Chain A: A.46, E.47, A.50 Chain E: E.47, L.51, E.54 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:L.51 Hydrogen bonds: E:E.54

2 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)

BU1.2: 7 residues within 4Å: Chain A: H.17, F.18, G.20, A.125, W.126, E.127, T.128 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.18 Hydrogen bonds: A:H.17, A:F.18, A:G.20, A:T.128 BU1.10: 2 residues within 4Å: Chain E: R.53, H.61 No protein-ligand interaction detected (PLIP)

6 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.3: 22 residues within 4Å: Chain A: Y.112, H.116, L.118, N.148, N.166, T.178, P.179 Chain B: F.84, N.86, L.104, I.105, G.106, W.140, G.142, G.143, A.160, A.161, L.174, G.176, G.177, L.183, R.184 13 PLIP interactions: 10 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:L.104, B:A.160, B:L.174, A:L.118 Hydrogen bonds: B:N.86, B:G.143, B:A.161, B:A.161, B:G.177, B:R.184, A:N.166 Salt bridges: B:R.184 Water bridges: A:S.115 ACO.5: 21 residues within 4Å: Chain A: N.86, L.104, G.106, P.107, G.142, G.143, A.160, A.161, L.174, G.176, G.177, L.183, R.184 Chain C: L.92, Y.112, H.116, N.148, V.164, N.166, T.178, P.179 13 PLIP interactions: 4 interactions with chain C, 9 interactions with chain A Hydrogen bonds: C:N.148, C:N.166, A:N.86, A:G.143, A:A.161, A:A.161, A:G.177 Water bridges: C:Y.112, C:A.114 Hydrophobic interactions: A:L.104, A:A.160, A:L.174 Salt bridges: A:R.184 ACO.6: 24 residues within 4Å: Chain B: L.92, Y.112, A.114, H.116, L.118, V.164, N.166, T.178, P.179 Chain C: F.84, N.86, L.104, I.105, G.106, P.107, W.140, G.142, G.143, A.160, A.161, G.176, G.177, L.183, R.184 14 PLIP interactions: 10 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: C:L.104, C:W.140, C:A.160, B:L.118 Hydrogen bonds: C:N.86, C:G.143, C:A.161, C:A.161, C:G.177, C:R.184, B:A.114 Salt bridges: C:R.184 Water bridges: B:N.166, B:N.166 ACO.9: 23 residues within 4Å: Chain D: N.86, I.105, G.106, W.140, I.141, G.142, G.143, A.160, A.161, G.176, G.177, R.181, R.184 Chain E: L.92, Y.112, A.114, H.116, L.118, N.148, V.164, N.166, T.178, P.179 15 PLIP interactions: 11 interactions with chain D, 4 interactions with chain E Hydrophobic interactions: D:A.160 Hydrogen bonds: D:N.86, D:G.143, D:A.161, D:A.161, D:G.177, D:R.181, D:R.184, E:A.114, E:N.148, E:N.166 Water bridges: D:R.184, D:R.184, E:N.166 Salt bridges: D:R.184 ACO.13: 21 residues within 4Å: Chain E: N.86, G.106, W.140, G.142, G.143, A.160, A.161, L.174, G.176, G.177, R.181, L.183 Chain F: L.92, Y.112, A.114, H.116, L.118, N.148, N.166, T.178, P.179 14 PLIP interactions: 10 interactions with chain E, 4 interactions with chain F Hydrophobic interactions: E:W.140, E:A.160, E:L.174, F:L.118 Hydrogen bonds: E:N.86, E:G.143, E:A.161, E:A.161, E:G.177, F:A.114, F:N.148, F:N.166 Water bridges: E:R.181 Salt bridges: E:R.181 ACO.14: 25 residues within 4Å: Chain D: L.92, Y.112, A.114, H.116, L.118, N.148, V.164, N.166, T.178, P.179 Chain F: N.86, L.104, G.106, P.107, W.140, G.142, G.143, A.160, A.161, L.174, G.176, G.177, R.181, L.183, R.184 19 PLIP interactions: 13 interactions with chain F, 6 interactions with chain D Hydrophobic interactions: F:L.104, F:W.140, F:A.160, F:L.174, D:L.118 Hydrogen bonds: F:N.86, F:G.143, F:A.161, F:A.161, F:R.184, D:A.114, D:N.166 Water bridges: F:G.177, F:R.181, D:S.115, D:N.148, D:N.148 Salt bridges: F:R.181, F:R.184

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain B: H.17, H.116, S.117, I.129 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain D: L.37, N.40 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.15: 6 residues within 4Å: Chain F: E.45, R.48, Q.52, C.64, V.65, Q.66 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:R.48, F:R.48, F:Q.52, F:V.65, F:Q.66, F:Q.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Hexapeptide-Repeat containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A from Vibrio cholerae O1 biovar eltor. To be Published

Release Date

2010-08-04

Peptides

Hexapeptide-repeat containing-acetyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

D
J

E
K

F
L

Hexapeptide-repeat containing-acetyltransferase

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