SMTL ID : 3nz2.5 (5 other biounits)

Crystal Structure of Hexapeptide-Repeat containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A from Vibrio cholerae O1 biovar eltor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-trimer

Ligands

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 6 residues within 4Å: Chain A: E.45, R.48, Q.52, C.64, V.65, Q.66 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.45 Hydrogen bonds: A:Q.52, A:V.65 Salt bridges: A:R.48 ACY.7: 4 residues within 4Å: Chain B: Q.124, W.126 Chain C: K.62, H.82 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:W.126 Salt bridges: C:H.82

1 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)

BU1.2: 7 residues within 4Å: Chain A: H.17, F.18, G.20, A.125, W.126, E.127, T.128 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.18 Hydrogen bonds: A:H.17, A:F.18, A:G.20, A:T.128

3 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.3: 22 residues within 4Å: Chain A: Y.112, H.116, L.118, N.148, N.166, T.178, P.179 Chain B: F.84, N.86, L.104, I.105, G.106, W.140, G.142, G.143, A.160, A.161, L.174, G.176, G.177, L.183, R.184 13 PLIP interactions: 10 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:L.104, B:A.160, B:L.174, A:L.118 Hydrogen bonds: B:N.86, B:G.143, B:A.161, B:A.161, B:G.177, B:R.184, A:N.166 Salt bridges: B:R.184 Water bridges: A:S.115 ACO.5: 21 residues within 4Å: Chain A: N.86, L.104, G.106, P.107, G.142, G.143, A.160, A.161, L.174, G.176, G.177, L.183, R.184 Chain C: L.92, Y.112, H.116, N.148, V.164, N.166, T.178, P.179 13 PLIP interactions: 9 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: A:L.104, A:A.160, A:L.174 Hydrogen bonds: A:N.86, A:G.143, A:A.161, A:A.161, A:G.177, C:N.148, C:N.166 Salt bridges: A:R.184 Water bridges: C:Y.112, C:A.114 ACO.6: 24 residues within 4Å: Chain B: L.92, Y.112, A.114, H.116, L.118, V.164, N.166, T.178, P.179 Chain C: F.84, N.86, L.104, I.105, G.106, P.107, W.140, G.142, G.143, A.160, A.161, G.176, G.177, L.183, R.184 14 PLIP interactions: 10 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: C:L.104, C:W.140, C:A.160, B:L.118 Hydrogen bonds: C:N.86, C:G.143, C:A.161, C:A.161, C:G.177, C:R.184, B:A.114 Salt bridges: C:R.184 Water bridges: B:N.166, B:N.166

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain B: H.17, H.116, S.117, I.129 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Hexapeptide-Repeat containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A from Vibrio cholerae O1 biovar eltor. To be Published

Release Date

2010-08-04

Peptides

Hexapeptide-repeat containing-acetyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

Hexapeptide-repeat containing-acetyltransferase

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