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SMTL ID : 3o6r.1
Crystal Structure of 4-Chlorocatechol Dioxygenase from Rhodococcus opacus 1CP in complex with pyrogallol
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.60 Å
Oligo State
homo-dimer
Ligands
2 x
FE
:
FE (III) ION
(Non-covalent)
FE.1:
4 residues within 4Å:
Chain A:
Y.134
,
H.194
,
H.196
Ligands:
PYG.4
3
PLIP interactions
:
3 interactions with chain A
Metal complexes:
A:Y.134
,
A:H.194
,
A:H.196
FE.5:
4 residues within 4Å:
Chain B:
Y.134
,
H.194
,
H.196
Ligands:
PYG.6
3
PLIP interactions
:
3 interactions with chain B
Metal complexes:
B:Y.134
,
B:H.194
,
B:H.196
2 x
MYY
:
(2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE
(Non-covalent)
MYY.2:
14 residues within 4Å:
Chain A:
N.3
,
V.6
,
L.9
,
F.10
,
F.13
,
M.38
Chain B:
T.33
,
I.34
,
Y.37
,
W.50
,
F.55
,
L.180
,
Y.184
Ligands:
MYY.3
17
PLIP interactions
:
6 interactions with chain A
,
11 interactions with chain B
Hydrophobic interactions:
A:V.6
,
A:V.6
,
A:L.9
,
A:F.13
,
A:F.13
,
B:I.34
,
B:I.34
,
B:Y.37
,
B:Y.37
,
B:W.50
,
B:W.50
,
B:W.50
,
B:F.55
,
B:L.180
,
B:Y.184
Hydrogen bonds:
A:N.3
Water bridges:
B:Y.184
MYY.3:
17 residues within 4Å:
Chain A:
I.17
,
F.20
,
I.26
,
T.33
,
I.34
,
Y.37
,
M.38
,
W.50
,
L.180
,
Y.184
Chain B:
A.2
,
V.6
,
L.9
,
F.10
,
F.13
,
I.17
Ligands:
MYY.2
20
PLIP interactions
:
8 interactions with chain A
,
12 interactions with chain B
Hydrophobic interactions:
A:I.17
,
A:F.20
,
A:I.26
,
A:T.33
,
A:I.34
,
A:Y.37
,
A:W.50
,
A:L.180
,
B:V.6
,
B:V.6
,
B:L.9
,
B:L.9
,
B:F.10
,
B:F.13
,
B:F.13
,
B:F.13
,
B:F.13
,
B:F.13
,
B:I.17
Hydrogen bonds:
B:A.2
2 x
PYG
:
BENZENE-1,2,3-TRIOL
(Non-covalent)
PYG.4:
11 residues within 4Å:
Chain A:
G.76
,
P.77
,
F.78
,
Y.134
,
Y.169
,
I.171
,
R.191
,
H.194
,
H.196
,
C.224
Ligands:
FE.1
3
PLIP interactions
:
3 interactions with chain A
Hydrophobic interactions:
A:P.77
Hydrogen bonds:
A:Y.169
,
A:R.191
PYG.6:
9 residues within 4Å:
Chain B:
L.49
,
I.74
,
G.76
,
P.77
,
Y.134
,
R.191
,
H.194
,
H.196
Ligands:
FE.5
3
PLIP interactions
:
3 interactions with chain B
Hydrophobic interactions:
B:L.49
,
B:I.74
Hydrogen bonds:
B:R.191
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Ferraroni, M. et al., X-ray structures of 4-chlorocatechol 1,2-dioxygenase adducts with substituted catechols: new perspectives in the molecular basis of intradiol ring cleaving dioxygenases specificity. J. Struct. Biol. (2013)
Release Date
2011-08-17
Peptides
Chlorocatechol 1,2-dioxygenase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Chlorocatechol 1,2-dioxygenase
Toggle Identical (AB)
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1s9a.1
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