- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 9 x CA: CALCIUM ION(Non-covalent)
CA.2: 2 residues within 4Å:- Chain A: F.28, D.30
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:F.28, A:D.30, H2O.1
CA.3: 3 residues within 4Å:- Chain A: D.107, Y.137
- Ligands: ACT.7
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.107, A:Y.137, H2O.2, H2O.5, H2O.5
CA.6: 1 residues within 4Å:- Chain A: V.103
No protein-ligand interaction detected (PLIP)CA.9: 2 residues within 4Å:- Chain B: F.28, D.30
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:F.28, B:D.30, H2O.8
CA.10: 3 residues within 4Å:- Chain B: D.107, Y.137
- Ligands: ACT.14
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.107, B:Y.137, H2O.9, H2O.12, H2O.12
CA.13: 1 residues within 4Å:- Chain B: V.103
No protein-ligand interaction detected (PLIP)CA.16: 2 residues within 4Å:- Chain C: F.28, D.30
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:F.28, C:D.30, H2O.15
CA.17: 3 residues within 4Å:- Chain C: D.107, Y.137
- Ligands: ACT.21
5 PLIP interactions:2 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:D.107, C:Y.137, H2O.16, H2O.19, H2O.19
CA.20: 1 residues within 4Å:- Chain C: V.103
No protein-ligand interaction detected (PLIP)- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 5 residues within 4Å:- Chain A: T.124
- Chain B: T.124
- Chain C: T.124
- Ligands: MG.11, MG.18
No protein-ligand interaction detected (PLIP)MG.5: 3 residues within 4Å:- Chain A: S.17, T.35
- Ligands: GNP.1
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:S.17, A:T.35, H2O.1, H2O.1
MG.11: 5 residues within 4Å:- Chain A: T.124
- Chain B: T.124
- Chain C: T.124
- Ligands: MG.4, MG.18
No protein-ligand interaction detected (PLIP)MG.12: 3 residues within 4Å:- Chain B: S.17, T.35
- Ligands: GNP.8
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:S.17, B:T.35, H2O.7, H2O.8
MG.18: 5 residues within 4Å:- Chain A: T.124
- Chain B: T.124
- Chain C: T.124
- Ligands: MG.4, MG.11
No protein-ligand interaction detected (PLIP)MG.19: 3 residues within 4Å:- Chain C: S.17, T.35
- Ligands: GNP.15
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:S.17, C:T.35, H2O.14, H2O.14
- 3 x ACT: ACETATE ION(Non-functional Binders)
ACT.7: 9 residues within 4Å:- Chain A: R.97, K.101, S.106, D.107, D.108, V.109, M.111, Y.137
- Ligands: CA.3
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:R.97, A:K.101
- Hydrogen bonds: A:V.109
- Water bridges: A:R.97
- Salt bridges: A:R.97
ACT.14: 9 residues within 4Å:- Chain B: R.97, K.101, S.106, D.107, D.108, V.109, M.111, Y.137
- Ligands: CA.10
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:R.97, B:K.101
- Hydrogen bonds: B:V.109
- Water bridges: B:R.97
- Salt bridges: B:R.97
ACT.21: 9 residues within 4Å:- Chain C: R.97, K.101, S.106, D.107, D.108, V.109, M.111, Y.137
- Ligands: CA.17
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:R.97, C:K.101
- Hydrogen bonds: C:V.109
- Water bridges: C:R.97
- Salt bridges: C:R.97
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Buhrman, G. et al., Allosteric Modulation of Ras-GTP Is Linked to Signal Transduction through RAF Kinase. J.Biol.Chem. (2011)
- Release Date
- 2010-12-08
- Peptides
- GTPase HRas: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 9 x CA: CALCIUM ION(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 3 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Buhrman, G. et al., Allosteric Modulation of Ras-GTP Is Linked to Signal Transduction through RAF Kinase. J.Biol.Chem. (2011)
- Release Date
- 2010-12-08
- Peptides
- GTPase HRas: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A