SMTL ID : 3onq.3 (2 other biounits)

Crystal Structure of Regulator of Polyketide Synthase Expression BAD_0249 from Bifidobacterium adolescentis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.130, N.184 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.184, A:N.184 Water bridges: A:R.130, A:R.130, A:R.130, A:E.180 Salt bridges: A:R.130 SO4.2: 3 residues within 4Å: Chain A: R.130, S.131, G.135 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.131 Water bridges: A:G.135 Salt bridges: A:R.130 SO4.3: 4 residues within 4Å: Chain A: L.48, G.49, E.84, H.85 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.84 Water bridges: A:H.85 Salt bridges: A:H.85 SO4.4: 3 residues within 4Å: Chain A: R.190, Y.199, R.258 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.199 Water bridges: A:R.190, A:R.190 Salt bridges: A:R.190, A:R.258 SO4.5: 3 residues within 4Å: Chain A: P.197, R.229, R.232 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.229 Salt bridges: A:R.229, A:R.232 SO4.10: 3 residues within 4Å: Chain B: R.130, S.131, G.135 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.131 Water bridges: B:G.135, B:H.138 Salt bridges: B:R.130 SO4.11: 4 residues within 4Å: Chain B: T.106, P.107, E.108, V.109 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.108, B:V.109 SO4.12: 4 residues within 4Å: Chain B: R.190, Y.199, R.258, R.262 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.199 Water bridges: B:Y.186 Salt bridges: B:R.190, B:R.258, B:R.262 SO4.13: 4 residues within 4Å: Chain A: L.172, G.173 Chain B: R.178 Ligands: GOL.7 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.178 Salt bridges: B:R.178 SO4.14: 2 residues within 4Å: Chain B: S.66, L.67 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.67 Water bridges: B:A.68

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 3 residues within 4Å: Chain A: H.222, N.224, T.225 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.224, A:T.225, A:T.225 GOL.7: 5 residues within 4Å: Chain A: G.173, D.175, R.178 Chain B: G.173 Ligands: SO4.13 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.178, A:R.178 Water bridges: A:G.173, A:G.173, A:D.175 GOL.8: 2 residues within 4Å: Chain A: T.34, R.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.141, A:R.141 GOL.9: 6 residues within 4Å: Chain A: P.244, R.245, Y.248 Chain B: L.206, K.207, T.251 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.207, A:R.245 Water bridges: B:T.251 GOL.15: 3 residues within 4Å: Chain B: R.130, H.138, E.180 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.130, B:R.130, B:H.138, B:E.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Regulator of Polyketide Synthase Expression BAD_0249 from Bifidobacterium adolescentis. To be Published

Release Date

2010-09-08

Peptides

Regulator of polyketide synthase expression: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Regulator of polyketide synthase expression

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