SMTL ID : 3oob.1

Structural and functional insights of directly targeting Pin1 by Epigallocatechin-3-gallate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: K.63, S.67, R.68, R.69, Q.131, S.154 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.69, A:Q.131 Salt bridges: A:K.63

3 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)

PE4.2: 12 residues within 4Å: Chain A: Y.23, N.30, A.31, S.32, Q.33, W.34, I.93, K.97, M.146, S.147, G.148 Ligands: KDH.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.32, A:Q.33, A:K.97 Water bridges: A:S.32 PE4.3: 3 residues within 4Å: Chain A: G.128, Q.129, Q.131 No protein-ligand interaction detected (PLIP) PE4.4: 6 residues within 4Å: Chain A: H.59, L.122, M.130, Q.131, F.134, H.157 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.131, A:Q.131 Water bridges: A:S.154

2 x KDH: (2R,3R)-5,7-dihydroxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-chromen-3-yl 3,4,5-trihydroxybenzoate(Non-covalent)

KDH.5: 6 residues within 4Å: Chain A: M.15, S.16, R.17, S.18, Y.23 Ligands: PE4.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:R.17 Hydrogen bonds: A:S.16, A:R.17, A:S.18, A:Y.23, A:Y.23 Water bridges: A:S.16 Salt bridges: A:R.17 KDH.6: 5 residues within 4Å: Chain A: S.72, W.73, D.112, C.113, S.114 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.73 Hydrogen bonds: A:W.73, A:S.114, A:S.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Urusova, D.V. et al., Epigallocatechin-gallate suppresses tumorigenesis by directly targeting Pin1. Cancer Prev Res (Phila) (2011)

Release Date

2011-08-17

Peptides

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1

Related Entries With Identical Sequence