SMTL ID : 3op2.1

Crystal structure of putative mandelate racemase from Bordetella bronchiseptica RB50 complexed with 2-oxoglutarate/phosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: K.171, D.201, E.227, E.254 Ligands: AKG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.201, A:E.227, A:E.254, H2O.4 MG.3: 5 residues within 4Å: Chain B: K.173, D.201, E.227, E.254 Ligands: PO4.4 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.201, B:E.227, B:E.254, H2O.9, H2O.13

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 10 residues within 4Å: Chain A: K.171, K.173, D.201, N.203, E.227, E.254, H.304, F.306, E.329 Ligands: MG.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.144, A:D.201, A:N.203 Water bridges: A:Y.142 Salt bridges: A:K.171, A:K.173, A:H.304

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 11 residues within 4Å: Chain B: S.144, S.145, K.171, K.173, D.201, E.227, E.254, H.304, F.306, E.329 Ligands: MG.3 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.145, B:E.254 Water bridges: B:E.254, B:H.304 Salt bridges: B:K.171, B:K.173, B:H.304

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malashkevich, V.N. et al., Crystal structure of putative mandelate racemase from Bordetella bronchiseptica RB50 complexed with 2-oxoglutarate/phosphate. To be Published

Release Date

2010-09-15

Peptides

Putative mandelate racemase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative mandelate racemase

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