SMTL ID : 3op5.3 (3 other biounits)

Human vaccinia-related kinase 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x REB: [4-({4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]pyrimidin-2-yl}amino)phenyl]acetonitrile(Non-covalent)

REB.1: 12 residues within 4Å: Chain A: I.43, G.44, I.51, V.69, K.71, Y.87, M.131, D.132, R.133, F.134, L.184, V.196 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.43, A:I.51, A:M.131, A:F.134 Hydrogen bonds: A:Y.87, A:D.132, A:F.134, A:F.134 Water bridges: A:D.197, A:D.197, A:D.197, A:D.197

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: S.229, I.230, D.231, R.241, E.245, R.279 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.229, A:I.230, A:D.231, A:R.279 Water bridges: A:R.241, A:R.241, A:E.245, A:R.279 EDO.3: 4 residues within 4Å: Chain A: L.308, D.310, E.313 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.308 EDO.4: 4 residues within 4Å: Chain A: D.310, T.312, E.313 Ligands: EDO.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.310, A:D.310 Water bridges: A:T.312

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Counago, R.M. et al., Structural characterization of human Vaccinia-Related Kinases (VRK) bound to small-molecule inhibitors identifies different P-loop conformations. Sci Rep (2017)

Release Date

2010-09-22

Peptides

Serine/threonine-protein kinase VRK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Serine/threonine-protein kinase VRK1

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