SMTL ID : 5uvf.2 (3 other biounits)

Crystal Structure of the Human vaccinia-related kinase bound to BI-D1870

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: R.151, P.296, G.297, A.330 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.295, A:G.297 Salt bridges: A:R.151

1 x 7DZ: (7S)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-5,7-dimethyl-8-(3-methylbutyl)-7,8-dihydropteridin-6(5H)-one(Non-covalent)

7DZ.2: 12 residues within 4Å: Chain A: I.43, I.51, V.69, K.71, M.131, D.132, R.133, F.134, G.135, S.181, L.184, V.196 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.43, A:I.51, A:V.196 Hydrogen bonds: A:F.134, A:F.134 Water bridges: A:D.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Counago, R.M. et al., Structural characterization of human Vaccinia-Related Kinases (VRK) bound to small-molecule inhibitors identifies different P-loop conformations. Sci Rep (2017)

Release Date

2017-03-22

Peptides

Serine/threonine-protein kinase VRK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Serine/threonine-protein kinase VRK1

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