SMTL ID : 3op7.1

Crystal structure of a PLP-dependent aminotransferase (ZP_03625122.1) from Streptococcus suis 89-1591 at 1.70 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x UNL: UNKNOWN LIGAND

UNL.1: 8 residues within 4Å: Chain A: E.10, L.13, N.14, E.17 Chain B: Y.59, I.62, D.249, I.253 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.17 Water bridges: A:N.14, A:Y.115, A:R.347, B:D.249 UNL.11: 8 residues within 4Å: Chain A: Y.59, I.62, D.249, I.253 Chain B: E.10, L.13, N.14, E.17 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:E.17 Water bridges: B:E.10, B:E.10, B:N.14, B:Y.115, B:Y.115, B:R.347

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.56, N.58 Chain B: S.30, S.31 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.31, B:S.31, A:N.58 SO4.3: 2 residues within 4Å: Chain A: K.56, N.58 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.58 Water bridges: A:K.56 SO4.4: 4 residues within 4Å: Chain A: I.134, E.135, E.136, E.137 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.136, A:E.137 Water bridges: A:R.342 SO4.12: 4 residues within 4Å: Chain A: S.30, S.31 Chain B: K.56, N.58 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.31, A:S.31, B:N.58 SO4.13: 2 residues within 4Å: Chain B: K.56, N.58 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.58 Water bridges: B:K.56 SO4.14: 4 residues within 4Å: Chain B: I.134, E.135, E.136, E.137 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.136, B:E.137 Water bridges: B:R.342

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 4 residues within 4Å: Chain A: G.139, A.169, V.170, A.304 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.139, A:V.170 EDO.6: 4 residues within 4Å: Chain A: Y.76, R.197, S.206, N.218 4 PLIP interactions: 4 interactions with chain A Water bridges: A:Y.76, A:E.194, A:S.206, A:N.218 EDO.7: 4 residues within 4Å: Chain A: G.60, W.61, I.62 Chain B: N.18 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:N.18, A:G.60, A:I.62 Water bridges: A:E.63 EDO.8: 4 residues within 4Å: Chain A: R.197, L.274, E.275, R.278 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.197, A:R.197, A:E.275, A:R.278 EDO.9: 3 residues within 4Å: Chain A: R.148, E.181, E.185 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.148, A:R.148, A:E.185, A:E.185 EDO.10: 4 residues within 4Å: Chain A: T.77, R.173, P.205, E.209 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.77, A:R.173 Water bridges: A:T.77, A:S.206 EDO.15: 4 residues within 4Å: Chain B: G.139, A.169, V.170, A.304 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.139, B:V.170 EDO.16: 4 residues within 4Å: Chain B: Y.76, R.197, S.206, N.218 4 PLIP interactions: 4 interactions with chain B Water bridges: B:Y.76, B:E.194, B:S.206, B:N.218 EDO.17: 4 residues within 4Å: Chain A: N.18 Chain B: G.60, W.61, I.62 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.60, B:I.62, A:N.18 Water bridges: B:E.63 EDO.18: 4 residues within 4Å: Chain B: R.197, L.274, E.275, R.278 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.197, B:R.197, B:E.275, B:E.275, B:R.278 EDO.19: 3 residues within 4Å: Chain B: R.148, E.181, E.185 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.148, B:R.148, B:E.185 EDO.20: 4 residues within 4Å: Chain B: T.77, R.173, P.205, E.209 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.77, B:T.77, B:R.173 Water bridges: B:S.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a PLP-dependent aminotransferase (ZP_03625122.1) from Streptococcus suis 89-1591 at 1.70 A resolution. To be published

Release Date

2010-09-15

Peptides

Aminotransferase class I and II: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Aminotransferase class I and II

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