SMTL ID : 3p6k.1

Crystal structure of a PLP-dependent aminotransferase (ZP_03625122.1) from Streptococcus suis 89-1591 at 2.07 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.30, S.31 Chain B: K.56, N.58 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.31, A:S.31, B:N.58 Salt bridges: B:K.56 SO4.5: 6 residues within 4Å: Chain A: K.56, N.58 Chain B: S.28, I.29, S.30, S.31 10 PLIP interactions: 4 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:N.58, B:I.29, B:S.30, B:S.31, B:S.31 Water bridges: A:K.56, A:K.56, B:S.28, B:E.353 Salt bridges: A:K.56 SO4.6: 5 residues within 4Å: Chain B: E.329, H.330, Q.366, F.367, R.370 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:H.330, B:R.370

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: G.60, W.61 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.61 Water bridges: A:W.61

2 x UNL: UNKNOWN LIGAND

UNL.3: 7 residues within 4Å: Chain A: E.10, L.13, N.14 Chain B: Y.59, I.62, D.249, I.253 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.14 Water bridges: A:E.10, A:E.10, A:Y.115, A:Y.115 UNL.4: 8 residues within 4Å: Chain A: Y.59, I.62, D.249, I.253 Chain B: E.10, L.13, N.14, V.27 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Water bridges: A:R.248, A:D.249, A:D.249, B:N.14, B:N.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a PLP-dependent aminotransferase (ZP_03625122.1) from Streptococcus suis 89-1591 at 2.07 A resolution. To be published

Release Date

2010-10-27

Peptides

Aminotransferase class I and II: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aminotransferase class I and II

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