- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MLA: MALONIC ACID(Non-covalent)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 4 residues within 4Å:- Chain A: A.96, R.120
- Chain B: A.96, R.120
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Water bridges: B:A.96, B:R.120, A:R.120
EDO.4: 8 residues within 4Å:- Chain A: G.193, G.194, K.195, A.231, A.232, K.233, L.234
- Chain B: E.421
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:G.194, A:K.195, A:K.233, A:L.234
- Water bridges: A:L.192
EDO.5: 8 residues within 4Å:- Chain A: M.75, R.79, A.128, I.131, E.132, W.144, R.395, E.396
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:R.79, A:R.79, A:E.132, A:E.132, A:R.395, A:R.395, A:E.396
EDO.9: 8 residues within 4Å:- Chain A: E.421
- Chain B: G.193, G.194, K.195, A.231, A.232, K.233, L.234
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.195, B:K.233, B:L.234
EDO.10: 8 residues within 4Å:- Chain B: M.75, R.79, A.128, I.131, E.132, W.144, R.395, E.396
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:R.79, B:R.79, B:E.132, B:E.132, B:R.395, B:R.395, B:E.396
EDO.14: 7 residues within 4Å:- Chain C: G.193, G.194, K.195, A.231, A.232, K.233, L.234
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:L.192, C:K.195, C:K.233, C:L.234
EDO.15: 7 residues within 4Å:- Chain C: L.197, D.243, F.246, V.261, K.262, P.267, R.271
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:D.243, C:R.271
- Water bridges: C:K.262
EDO.16: 7 residues within 4Å:- Chain C: M.75, R.79, A.128, I.131, E.132, R.395, E.396
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.79, C:R.79, C:E.132, C:R.395, C:R.395, C:E.396
EDO.18: 4 residues within 4Å:- Chain C: A.96, R.120
- Chain D: A.96, R.120
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain D- Water bridges: C:R.120, D:R.120, D:R.120
EDO.22: 9 residues within 4Å:- Chain C: E.421
- Chain D: L.192, G.193, G.194, K.195, A.231, A.232, K.233, L.234
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:L.192, D:K.195, D:K.233, D:L.234
EDO.23: 7 residues within 4Å:- Chain D: M.75, R.79, A.128, I.131, E.132, R.395, E.396
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:R.79, D:R.79, D:E.132, D:E.132, D:R.395, D:R.395, D:E.396
- 9 x NA: SODIUM ION(Non-functional Binders)
NA.3: 3 residues within 4Å:- Chain A: D.161
- Chain D: Q.106, S.107
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:Q.106
NA.6: 2 residues within 4Å:- Chain A: D.105, D.151
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.105, A:K.187, A:R.226
- Water bridges: A:W.90
NA.8: 3 residues within 4Å:- Chain B: F.156, D.161
- Chain C: S.107
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.161
NA.11: 2 residues within 4Å:- Chain B: D.151
- Ligands: MLA.7
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.151, B:K.187, B:R.226
- Water bridges: B:W.90
NA.13: 3 residues within 4Å:- Chain B: S.107
- Chain C: F.156, D.161
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:F.156
NA.17: 4 residues within 4Å:- Chain C: D.105, D.151, K.187
- Ligands: MLA.12
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:D.151, C:K.187
- Water bridges: C:W.90, C:R.226
NA.19: 1 residues within 4Å:- Chain C: V.247
3 PLIP interactions:3 interactions with chain C- Water bridges: C:P.245, C:F.246, C:V.247
NA.21: 3 residues within 4Å:- Chain A: S.107
- Chain D: F.156, D.161
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:F.156
NA.24: 2 residues within 4Å:- Chain D: D.151, K.187
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:W.90, D:D.151, D:K.187, D:R.226
- Water bridges: D:D.151
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- SSGCID et al., Crystal structure of isocitrate lyase from Brucella melitensis, bound to the product mimic malonate. To be Published
- Release Date
- 2010-09-15
- Peptides
- Isocitrate lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MLA: MALONIC ACID(Non-covalent)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 9 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- SSGCID et al., Crystal structure of isocitrate lyase from Brucella melitensis, bound to the product mimic malonate. To be Published
- Release Date
- 2010-09-15
- Peptides
- Isocitrate lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D