SMTL ID : 3oqt.3 (3 other biounits)

Crystal structure of Rv1498A protein from mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.88 Å

Oligo State

homo-12-mer

Ligands

6 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: D.20 Chain E: D.20 Chain I: D.20 Ligands: NA.5, NA.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.20 NA.4: 3 residues within 4Å: Chain D: D.20 Chain F: D.20 Chain K: D.20 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.20 NA.5: 5 residues within 4Å: Chain A: D.20 Chain E: D.20 Chain I: D.20 Ligands: NA.1, NA.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.20 NA.8: 3 residues within 4Å: Chain C: D.20 Chain H: D.20 Chain J: D.20 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:D.20 NA.9: 5 residues within 4Å: Chain A: D.20 Chain E: D.20 Chain I: D.20 Ligands: NA.1, NA.5 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:D.20 NA.12: 3 residues within 4Å: Chain B: D.20 Chain G: D.20 Chain L: D.20 2 PLIP interactions: 1 interactions with chain L, 1 interactions with chain G Hydrogen bonds: L:D.20, G:D.20

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain C: K.62 Chain G: K.62 Chain K: K.62 Ligands: CL.6, CL.10 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain D: K.62 Chain E: K.62 Chain J: K.62 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain C: K.62 Chain G: K.62 Chain K: K.62 Ligands: CL.2, CL.10 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain B: K.62 Chain H: K.62 Chain I: K.62 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain C: K.62 Chain G: K.62 Chain K: K.62 Ligands: CL.2, CL.6 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain A: K.62 Chain F: K.62 Chain L: K.62 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, F. et al., Structural and biophysical characterization of Mycobacterium tuberculosis dodecin Rv1498A. J.Struct.Biol. (2011)

Release Date

2011-07-20

Peptides

Rv1498A PROTEIN: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

C
K

D
L

E
I

F
J

G
K

H
L

I
I

J
J

K
K

L
L

Rv1498A PROTEIN

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