SMTL ID : 3oqt.4 (3 other biounits)

Crystal structure of Rv1498A protein from mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.88 Å

Oligo State

homo-12-mer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain C: K.62 Chain K: Q.43, K.62 Ligands: CL.4, CL.7 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain D: K.62 Chain E: K.62 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain C: Q.43, K.62 Chain G: K.62 Ligands: CL.1, CL.7 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain H: K.62 Chain I: K.62 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain G: Q.43, K.62 Chain K: K.62 Ligands: CL.1, CL.4 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: K.62 Chain L: K.62 Ligand excluded by PLIP

3 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain D: D.20 Chain F: D.20 Chain K: D.20 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:D.20 NA.6: 3 residues within 4Å: Chain C: D.20 Chain H: D.20 Chain J: D.20 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain J Hydrogen bonds: H:D.20 Water bridges: J:D.20 NA.9: 3 residues within 4Å: Chain B: D.20 Chain G: D.20 Chain L: D.20 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain B Hydrogen bonds: G:D.20, G:D.20 Water bridges: B:D.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, F. et al., Structural and biophysical characterization of Mycobacterium tuberculosis dodecin Rv1498A. J.Struct.Biol. (2011)

Release Date

2011-07-20

Peptides

Rv1498A PROTEIN: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
N

C
O

D
P

E
M

F
N

G
O

H
P

I
M

J
N

K
O

L
P

Rv1498A PROTEIN

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