- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 11 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 11 residues within 4Å:- Chain A: N.39, H.215, E.265, H.315, P.317, D.319, L.392, W.405
- Chain B: Y.77, W.78
- Ligands: GOL.3
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.39, A:H.215, A:D.319
- Water bridges: A:T.318, B:Y.77
GOL.3: 5 residues within 4Å:- Chain A: L.392, P.393, W.405
- Ligands: GOL.2, SO4.5
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.391
- Water bridges: A:N.39
GOL.7: 11 residues within 4Å:- Chain A: Y.77, W.78
- Chain B: N.39, P.173, H.215, E.265, H.315, P.317, D.319, L.392, W.405
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.39, B:H.215, B:D.319
GOL.10: 11 residues within 4Å:- Chain C: N.39, P.173, H.215, E.265, H.315, P.317, D.319, L.392, W.405
- Chain D: Y.77, W.78
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.39, C:H.215, C:D.319
- Water bridges: C:D.319
GOL.11: 3 residues within 4Å:- Chain C: A.352, L.381, Y.385
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:Y.385
GOL.15: 10 residues within 4Å:- Chain C: Y.77, W.78
- Chain D: N.39, P.173, H.215, E.265, H.315, P.317, D.319, W.405
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:N.39, D:D.319
- Water bridges: D:D.319, C:Y.77
GOL.19: 10 residues within 4Å:- Chain E: N.39, H.215, E.265, H.315, P.317, D.319, L.392, W.405
- Chain F: Y.77, W.78
5 PLIP interactions:4 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:N.39, E:H.215, E:D.319
- Water bridges: E:T.318, F:Y.77
GOL.22: 11 residues within 4Å:- Chain E: Y.77, W.78
- Chain F: N.39, P.173, H.215, E.265, H.315, P.317, D.319, L.392, W.405
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:N.39, F:H.215, F:D.319
- Water bridges: F:T.318
GOL.26: 10 residues within 4Å:- Chain G: N.39, H.215, E.265, H.315, P.317, D.319, L.392, W.405
- Chain H: Y.77, W.78
3 PLIP interactions:3 interactions with chain G- Hydrogen bonds: G:N.39, G:H.315
- Water bridges: G:T.318
GOL.31: 10 residues within 4Å:- Chain G: Y.77, W.78
- Chain H: N.39, H.215, E.265, H.315, P.317, D.319, L.392, W.405
4 PLIP interactions:3 interactions with chain H, 1 interactions with chain G- Hydrogen bonds: H:N.39, H:H.215, H:D.319
- Water bridges: G:Y.77
GOL.32: 3 residues within 4Å:- Chain H: D.357, E.369, S.370
3 PLIP interactions:3 interactions with chain H- Hydrogen bonds: H:D.357
- Water bridges: H:E.369, H:E.369
- 15 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 4 residues within 4Å:- Chain A: T.129, I.130, P.155, H.192
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:I.130
- Water bridges: A:T.129, A:E.131
- Salt bridges: A:H.192
SO4.5: 3 residues within 4Å:- Chain A: R.17, T.318
- Ligands: GOL.3
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.318
- Water bridges: A:R.17, A:R.17, A:T.318, A:D.319
- Salt bridges: A:R.17
SO4.8: 3 residues within 4Å:- Chain B: T.129, I.130, H.192
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:I.130
- Water bridges: B:T.129
- Salt bridges: B:H.192
SO4.12: 3 residues within 4Å:- Chain C: T.129, I.130, H.192
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:I.130
- Water bridges: C:E.131
- Salt bridges: C:H.192
SO4.13: 3 residues within 4Å:- Chain C: R.17, P.173, T.318
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:P.173, C:T.318
- Water bridges: C:R.17, C:N.39, C:A.174, C:D.319
- Salt bridges: C:R.17
SO4.16: 3 residues within 4Å:- Chain D: T.129, I.130, H.192
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:I.130
- Water bridges: D:Q.128, D:E.131, D:H.192
- Salt bridges: D:H.192
SO4.17: 3 residues within 4Å:- Chain D: R.17, P.173, T.318
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:T.318
- Water bridges: D:R.17, D:R.17, D:N.39, D:A.174, D:T.318, D:D.319
- Salt bridges: D:R.17
SO4.20: 3 residues within 4Å:- Chain E: T.129, I.130, H.192
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:I.130
- Salt bridges: E:H.192
SO4.23: 3 residues within 4Å:- Chain F: T.129, I.130, H.192
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:I.130
- Salt bridges: F:H.192
SO4.24: 3 residues within 4Å:- Chain F: R.17, P.173, T.318
9 PLIP interactions:9 interactions with chain F- Hydrogen bonds: F:P.173, F:T.318
- Water bridges: F:R.17, F:R.17, F:A.174, F:T.318, F:T.318, F:D.319
- Salt bridges: F:R.17
SO4.27: 3 residues within 4Å:- Chain G: T.129, I.130, H.192
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:I.130
- Salt bridges: G:H.192
SO4.28: 2 residues within 4Å:- Chain G: R.17, T.318
7 PLIP interactions:7 interactions with chain G- Hydrogen bonds: G:T.318, G:T.318
- Water bridges: G:R.17, G:R.17, G:T.318, G:D.319
- Salt bridges: G:R.17
SO4.29: 3 residues within 4Å:- Chain G: R.139, H.140, P.345
2 PLIP interactions:2 interactions with chain G- Salt bridges: G:R.139, G:H.140
SO4.33: 3 residues within 4Å:- Chain H: T.129, I.130, H.192
3 PLIP interactions:3 interactions with chain H- Hydrogen bonds: H:I.130
- Water bridges: H:E.131
- Salt bridges: H:H.192
SO4.34: 3 residues within 4Å:- Chain H: R.17, P.173, T.318
8 PLIP interactions:8 interactions with chain H- Hydrogen bonds: H:T.318, H:T.318
- Water bridges: H:R.17, H:R.17, H:A.174, H:T.318, H:D.319
- Salt bridges: H:R.17
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fedorov, A.A. et al., CRYSTAL STRUCTURE OF D-MANNONATE DEHYDRATASE FROM CHROMOHALOBACTER SALEXIGENS complexed with MG. To be Published
- Release Date
- 2011-09-28
- Peptides
- Mandelate racemase/muconate lactonizing enzyme: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 11 x GOL: GLYCEROL(Non-functional Binders)
- 15 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fedorov, A.A. et al., CRYSTAL STRUCTURE OF D-MANNONATE DEHYDRATASE FROM CHROMOHALOBACTER SALEXIGENS complexed with MG. To be Published
- Release Date
- 2011-09-28
- Peptides
- Mandelate racemase/muconate lactonizing enzyme: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H