SMTL ID : 3ozm.1 (4 other biounits)

Crystal structure of enolase superfamily member from Bordetella bronchiseptica complexed with Mg, m-Xylarate and L-Lyxarate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: K.171, K.173, D.201, E.227, E.254 Ligands: DXL.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.201, A:E.227, A:E.254, H2O.12 MG.4: 6 residues within 4Å: Chain B: K.171, K.173, D.201, E.227, E.254 Ligands: DXL.5 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.201, B:E.227, B:E.254, H2O.13

2 x DXL: D-xylaric acid(Non-covalent)

DXL.2: 15 residues within 4Å: Chain A: S.25, A.27, K.30, S.144, Y.147, K.171, K.173, D.201, N.203, E.227, E.254, H.304, F.306, E.329 Ligands: MG.1 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:S.25, A:K.30, A:K.30, A:S.144, A:Y.147, A:N.203 Water bridges: A:S.25, A:Y.142, A:K.173, A:F.306, A:E.329 Salt bridges: A:K.30, A:K.171, A:K.173, A:K.173, A:H.304 DXL.5: 14 residues within 4Å: Chain B: S.25, A.27, K.30, Y.147, K.171, K.173, D.201, N.203, E.227, E.254, H.304, F.306, E.329 Ligands: MG.4 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:S.25, B:K.30, B:S.144, B:Y.147, B:D.201, B:N.203 Water bridges: B:S.25, B:K.30, B:Y.142, B:K.173, B:F.306 Salt bridges: B:K.30, B:K.171, B:K.173, B:K.173, B:H.304

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: T.47, V.49, R.120, E.364, I.365, W.367 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.47, A:E.364, A:I.365, A:W.367 Water bridges: A:T.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fedorov, A.A. et al., Crystal structure of enolase superfamily member from Bordetella bronchiseptica complexed with Mg, m-Xylarate and L-Lyxarate. TO BE PUBLISHED

Release Date

2011-09-28

Peptides

Putative mandelate racemase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

Putative mandelate racemase

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