SMTL ID : 3ozm.4 (4 other biounits)

Crystal structure of enolase superfamily member from Bordetella bronchiseptica complexed with Mg, m-Xylarate and L-Lyxarate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: K.171, D.201, E.227, E.254 Ligands: LY9.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.201, A:E.227, A:E.254, H2O.12 MG.4: 5 residues within 4Å: Chain B: K.171, D.201, E.227, E.254 Ligands: LY9.5 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.201, B:E.227, B:E.254, H2O.21

2 x LY9: L-arabinaric acid(Non-covalent)

LY9.2: 10 residues within 4Å: Chain A: K.171, K.173, D.201, N.203, E.227, E.254, H.304, F.306, E.329 Ligands: MG.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.173, A:K.173, A:N.203 Water bridges: A:E.329, A:E.329 Salt bridges: A:K.171, A:K.173, A:H.304 LY9.5: 11 residues within 4Å: Chain B: K.30, K.171, K.173, D.201, N.203, E.227, E.254, H.304, F.306, E.329 Ligands: MG.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:K.173, B:K.173, B:N.203 Water bridges: B:Y.142 Salt bridges: B:K.30, B:K.171, B:K.173, B:H.304

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: E.197, G.222, C.223, Y.224, P.247, V.248, R.249 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.197, A:C.223, A:P.247, A:R.249 GOL.6: 7 residues within 4Å: Chain B: E.197, G.222, C.223, Y.224, P.247, V.248, R.249 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.197, B:P.247, B:R.249 Water bridges: B:R.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fedorov, A.A. et al., Crystal structure of enolase superfamily member from Bordetella bronchiseptica complexed with Mg, m-Xylarate and L-Lyxarate. TO BE PUBLISHED

Release Date

2011-09-28

Peptides

Putative mandelate racemase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
H

Putative mandelate racemase

Related Entries With Identical Sequence