SMTL ID : 3p06.1 (2 other biounits)

Crystal structure of Tellina virus 1 VP4 protease in the form of an intra-molecular(cis)acyl-enzyme complex.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: S.102, T.124, G.125, N.135, L.136, L.137, A.138, K.141 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.124, A:T.124, A:N.135, A:L.136, A:L.137 Water bridges: A:A.126 Salt bridges: A:K.141

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: K.147, G.150, I.151, G.152 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.147, A:K.147 Water bridges: A:Q.142, A:Q.142, A:Q.142, A:G.150 GOL.3: 2 residues within 4Å: Chain A: E.36, H.37 No protein-ligand interaction detected (PLIP) GOL.4: 9 residues within 4Å: Chain A: G.24, G.25, L.144, V.145, P.148, A.149, T.184, F.185, S.186 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.186, A:S.186

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.5: 10 residues within 4Å: Chain A: G.25, A.26, P.80, V.81, P.92, P.96, F.185, S.186, S.187, G.188 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.94, A:G.188

1 x URE: UREA(Non-functional Binders)

URE.6: 7 residues within 4Å: Chain A: Q.117, T.118, P.119, V.173, G.174, D.175, K.176 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.117, A:G.174, A:K.176 Water bridges: A:S.115

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 1 residues within 4Å: Chain A: K.162 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chung, I.Y. et al., Crystal Structure of a Viral Protease Intramolecular Acyl-enzyme Complex: INSIGHTS INTO cis-CLEAVAGE AT THE VP4/VP3 JUNCTION OF TELLINA BIRNAVIRUS. J.Biol.Chem. (2011)

Release Date

2011-02-02

Peptides

VP4 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VP4 protein

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