- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 4 residues within 4Å:- Chain A: K.147, G.150, I.151, G.152
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.147, A:K.147
- Water bridges: A:Q.142, A:Q.142, A:Q.142, A:G.150
GOL.3: 2 residues within 4Å:- Chain A: E.36, H.37
No protein-ligand interaction detected (PLIP)GOL.4: 9 residues within 4Å:- Chain A: G.24, G.25, L.144, V.145, P.148, A.149, T.184, F.185, S.186
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.186, A:S.186
GOL.9: 4 residues within 4Å:- Chain B: K.147, G.150, I.151, G.152
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:K.147, B:K.147
- Water bridges: B:Q.142, B:Q.142, B:Q.142, B:G.150
GOL.10: 2 residues within 4Å:- Chain B: E.36, H.37
No protein-ligand interaction detected (PLIP)GOL.11: 9 residues within 4Å:- Chain B: G.24, G.25, L.144, V.145, P.148, A.149, T.184, F.185, S.186
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.186, B:S.186
GOL.16: 4 residues within 4Å:- Chain C: K.147, G.150, I.151, G.152
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:K.147, C:K.147
- Water bridges: C:Q.142, C:Q.142, C:Q.142, C:G.150
GOL.17: 2 residues within 4Å:- Chain C: E.36, H.37
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:E.36
GOL.18: 9 residues within 4Å:- Chain C: G.24, G.25, L.144, V.145, P.148, A.149, T.184, F.185, S.186
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:S.186, C:S.186
- Water bridges: C:T.184
GOL.23: 4 residues within 4Å:- Chain D: K.147, G.150, I.151, G.152
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:K.147, D:K.147
- Water bridges: D:Q.142, D:Q.142, D:Q.142, D:G.150
GOL.24: 2 residues within 4Å:- Chain D: E.36, H.37
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:E.36
GOL.25: 9 residues within 4Å:- Chain D: G.24, G.25, L.144, V.145, P.148, A.149, T.184, F.185, S.186
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:S.186, D:S.186
- Water bridges: D:T.184
- 4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.5: 10 residues within 4Å:- Chain A: G.25, A.26, P.80, V.81, P.92, P.96, F.185, S.186, S.187, G.188
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.94, A:G.188
BME.12: 10 residues within 4Å:- Chain B: G.25, A.26, P.80, V.81, P.92, P.96, F.185, S.186, S.187, G.188
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.94, B:G.188
BME.19: 10 residues within 4Å:- Chain C: G.25, A.26, P.80, V.81, P.92, P.96, F.185, S.186, S.187, G.188
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.94, C:G.188
BME.26: 10 residues within 4Å:- Chain D: G.25, A.26, P.80, V.81, P.92, P.96, F.185, S.186, S.187, G.188
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.94, D:G.188
- 4 x URE: UREA(Non-functional Binders)
URE.6: 7 residues within 4Å:- Chain A: Q.117, T.118, P.119, V.173, G.174, D.175, K.176
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.117, A:G.174, A:K.176
- Water bridges: A:S.115
URE.13: 7 residues within 4Å:- Chain B: Q.117, T.118, P.119, V.173, G.174, D.175, K.176
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Q.117, B:G.174, B:K.176
- Water bridges: B:S.115
URE.20: 7 residues within 4Å:- Chain C: Q.117, T.118, P.119, V.173, G.174, D.175, K.176
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:Q.117, C:G.174, C:K.176
- Water bridges: C:S.115
URE.27: 7 residues within 4Å:- Chain D: Q.117, T.118, P.119, V.173, G.174, D.175, K.176
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:Q.117, D:G.174, D:K.176
- Water bridges: D:S.115
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.7: 3 residues within 4Å:- Chain A: K.162
- Chain D: K.162
- Ligands: CL.28
Ligand excluded by PLIPCL.14: 3 residues within 4Å:- Chain B: K.162
- Chain C: K.162
- Ligands: CL.21
Ligand excluded by PLIPCL.21: 3 residues within 4Å:- Chain B: K.162
- Chain C: K.162
- Ligands: CL.14
Ligand excluded by PLIPCL.28: 3 residues within 4Å:- Chain A: K.162
- Chain D: K.162
- Ligands: CL.7
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chung, I.Y. et al., Crystal Structure of a Viral Protease Intramolecular Acyl-enzyme Complex: INSIGHTS INTO cis-CLEAVAGE AT THE VP4/VP3 JUNCTION OF TELLINA BIRNAVIRUS. J.Biol.Chem. (2011)
- Release Date
- 2011-02-02
- Peptides
- VP4 protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 4 x URE: UREA(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chung, I.Y. et al., Crystal Structure of a Viral Protease Intramolecular Acyl-enzyme Complex: INSIGHTS INTO cis-CLEAVAGE AT THE VP4/VP3 JUNCTION OF TELLINA BIRNAVIRUS. J.Biol.Chem. (2011)
- Release Date
- 2011-02-02
- Peptides
- VP4 protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A