SMTL ID : 3p2u.1

Crystal structure of PhnP in complex with orthovanadate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

homo-dimer

Ligands

2 x VO4: VANADATE ION(Non-covalent)

VO4.1: 9 residues within 4Å: Chain A: H.78, D.80, H.143, D.164, N.199, H.200, H.222 Ligands: MN.2, MN.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.80, A:H.200 Water bridges: A:A.13, A:D.80 VO4.5: 9 residues within 4Å: Chain B: H.78, D.80, H.143, D.164, N.199, H.200, H.222 Ligands: MN.6, MN.7 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.80 Water bridges: B:A.13, B:A.13, B:S.189, B:H.200

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 6 residues within 4Å: Chain A: H.76, H.78, H.143, D.164 Ligands: VO4.1, MN.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.76, A:H.78, A:H.143, A:D.164, H2O.1 MN.3: 6 residues within 4Å: Chain A: D.80, H.81, D.164, H.222 Ligands: VO4.1, MN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.80, A:H.81, A:D.164, A:H.222, H2O.1 MN.6: 6 residues within 4Å: Chain B: D.80, H.81, D.164, H.222 Ligands: VO4.5, MN.7 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.80, B:H.81, B:D.164, B:H.222, H2O.11 MN.7: 6 residues within 4Å: Chain B: H.76, H.78, H.143, D.164 Ligands: VO4.5, MN.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.76, B:H.78, B:H.143, B:D.164, H2O.11

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain A: C.21, C.23, C.26, H.225 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.21, A:C.23, A:C.26, A:H.225 ZN.8: 4 residues within 4Å: Chain B: C.21, C.23, C.26, H.225 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.21, B:C.23, B:C.26, B:H.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Podzelinska, K. et al., Crystal structure of PhnP in complex with orthovanadate. TO BE PUBLISHED

Release Date

2011-01-05

Peptides

Protein phnP: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein phnP

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