SMTL ID : 3p49.1

Crystal Structure of a Glycine Riboswitch from Fusobacterium nucleatum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.55 Å

Oligo State

monomer

Ligands

13 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 3 residues within 4Å: Chain A: C.62, A.63, G.64 No protein-ligand interaction detected (PLIP) MG.2: 1 residues within 4Å: Chain A: G.10 No protein-ligand interaction detected (PLIP) MG.3: 4 residues within 4Å: Chain A: U.152, C.153, A.154, G.155 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain A: U.94, G.96, G.163 No protein-ligand interaction detected (PLIP) MG.5: 7 residues within 4Å: Chain A: G.121, A.122, A.148, C.149, C.151, U.152 Ligands: GLY.12 1 PLIP interactions: 1 Ligand-Ligand interactions Metal complexes: GLY.12 MG.6: 6 residues within 4Å: Chain A: G.46, A.47, U.57, C.58, U.59 Ligands: GLY.11 No protein-ligand interaction detected (PLIP) MG.7: 2 residues within 4Å: Chain A: U.53, A.56 No protein-ligand interaction detected (PLIP) MG.8: 4 residues within 4Å: Chain A: U.157, A.158, A.159, A.160 No protein-ligand interaction detected (PLIP) MG.9: 3 residues within 4Å: Chain A: A.123, G.124, A.148 No protein-ligand interaction detected (PLIP) MG.10: 3 residues within 4Å: Chain A: A.48, G.49, U.57 No protein-ligand interaction detected (PLIP) MG.13: 2 residues within 4Å: Chain A: U.26, G.27 No protein-ligand interaction detected (PLIP) MG.14: 1 residues within 4Å: Chain A: G.127 No protein-ligand interaction detected (PLIP) MG.15: 3 residues within 4Å: Chain A: A.130, A.131, U.145 No protein-ligand interaction detected (PLIP)

2 x GLY: GLYCINE(Non-functional Binders)

GLY.11: 9 residues within 4Å: Chain A: G.46, A.47, A.48, G.49, A.50, U.60, U.61, A.63 Ligands: MG.6 No protein-ligand interaction detected (PLIP) GLY.12: 8 residues within 4Å: Chain A: G.121, A.122, A.123, G.124, G.125, C.151, U.152 Ligands: MG.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Butler, E.B. et al., Structural basis of cooperative ligand binding by the glycine riboswitch. Chem.Biol. (2011)

Release Date

2011-04-06

Peptides

U1 small nuclear ribonucleoprotein A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

U1 small nuclear ribonucleoprotein A

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