SMTL ID : 3p5b.1

The structure of the LDLR/PCSK9 complex reveals the receptor in an extended conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain B: A.176, A.178, P.179, V.181, T.183, C.206, D.208 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:A.178, B:V.181, B:T.183, B:C.206 CA.2: 6 residues within 4Å: Chain C: D.39, I.40, D.41, E.42, L.56, G.59 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.39, C:I.40, C:L.56 CA.3: 4 residues within 4Å: Chain C: N.1, E.2, D.16, L.17 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lo Surdo, P. et al., Mechanistic implications for LDL receptor degradation from the PCSK9/LDLR structure at neutral pH. Embo Rep. (2011)

Release Date

2011-10-26

Peptides

Proprotein convertase subtilisin/kexin type 9: A
Proprotein convertase subtilisin/kexin type 9: B
Low density lipoprotein receptor variant: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
A

C
L

Proprotein convertase subtilisin/kexin type 9

Proprotein convertase subtilisin/kexin type 9

Low density lipoprotein receptor variant

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