SMTL ID : 3p8h.1 (2 other biounits)

Crystal structure of L3MBTL1 (MBT repeat) in complex with a nicotinamide antagonist

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x P8H: 3-bromo-5-[(4-pyrrolidin-1-ylpiperidin-1-yl)carbonyl]pyridine(Non-covalent)

P8H.1: 8 residues within 4Å: Chain A: D.156, N.159, S.161, L.162, C.164, F.180, W.183, Y.187 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:N.159, A:F.180, A:W.183, A:W.183, A:Y.187, A:Y.187 Salt bridges: A:D.156 pi-Cation interactions: A:W.183, A:W.183

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: Y.76, S.77, H.80, K.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.77 Salt bridges: A:H.80, A:K.108

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: P.22, V.23, S.24 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.23, A:S.24 GOL.4: 2 residues within 4Å: Chain A: D.49, H.52 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herold, J.M. et al., Small-molecule ligands of methyl-lysine binding proteins. J.Med.Chem. (2011)

Release Date

2010-11-03

Peptides

Lethal(3)malignant brain tumor-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lethal(3)malignant brain tumor-like protein

Related Entries With Identical Sequence