SMTL ID : 3p8h.2 (2 other biounits)

Crystal structure of L3MBTL1 (MBT repeat) in complex with a nicotinamide antagonist

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x P8H: 3-bromo-5-[(4-pyrrolidin-1-ylpiperidin-1-yl)carbonyl]pyridine(Non-covalent)

P8H.1: 8 residues within 4Å: Chain A: D.156, N.159, S.161, L.162, C.164, F.180, W.183, Y.187 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:D.156, A:L.162, A:F.180, A:F.180, A:W.183, A:W.183, A:Y.187, A:Y.187 Hydrogen bonds: A:N.159 Salt bridges: A:D.156 pi-Cation interactions: A:W.183, A:W.183

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: Y.76, S.77, H.80, K.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.77 Salt bridges: A:H.80, A:K.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Herold, J.M. et al., Small-molecule ligands of methyl-lysine binding proteins. J.Med.Chem. (2011)

Release Date

2010-11-03

Peptides

Lethal(3)malignant brain tumor-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Lethal(3)malignant brain tumor-like protein

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