SMTL ID : 3pdo.1

Crystal Structure of HLA-DR1 with CLIP102-120

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: R.45, V.105, Y.151 Chain B: D.153 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.45, A:R.45, B:D.153, B:D.153 Water bridges: A:N.95, A:S.134, A:S.134 GOL.2: 3 residues within 4Å: Chain B: R.26, L.28, R.40 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.26, B:R.26, B:R.40, B:R.40 Water bridges: B:H.17

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 1 residues within 4Å: Chain B: R.95 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.95, B:R.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gunther, S. et al., Bidirectional binding of invariant chain peptides to an MHC class II molecule. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-12-08

Peptides

HLA class II histocompatibility antigen, DR alpha chain: A
HLA class II histocompatibility antigen, DRB1-1 beta chain: B
HLA class II histocompatibility antigen gamma chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

HLA class II histocompatibility antigen, DR alpha chain

HLA class II histocompatibility antigen, DRB1-1 beta chain

HLA class II histocompatibility antigen gamma chain

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