SMTL ID : 3pet.1 (2 other biounits)

Crystal structure of a putative adhesin (BF0245) from Bacteroides fragilis NCTC 9343 at 2.07 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: E.162, A.163, G.164, T.182 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: E.162, A.163, G.164, T.182 Ligand excluded by PLIP

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 8 residues within 4Å: Chain A: T.28, V.29, I.52, L.55, I.56, I.69, F.78, M.81 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.52, A:L.55, A:I.56, A:F.78 Hydrogen bonds: A:V.29 ACT.12: 7 residues within 4Å: Chain B: T.28, V.29, I.52, I.56, I.69, F.78, M.81 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.52, B:I.56, B:F.78 Hydrogen bonds: B:V.29

14 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 4 residues within 4Å: Chain A: Y.33, Y.47, K.82, E.104 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.82 PG4.4: 8 residues within 4Å: Chain A: K.71, K.96 Chain B: R.194, G.195, V.196, K.213, G.214, V.215 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.71 PG4.5: 2 residues within 4Å: Chain A: K.61, F.66 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.61 PG4.6: 2 residues within 4Å: Chain A: S.72, K.73 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.72, A:K.73 PG4.7: 9 residues within 4Å: Chain A: K.156, Q.176 Chain B: K.117, V.119, M.137, G.138, V.139 Ligands: PG4.16, PG4.18 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.156 PG4.8: 6 residues within 4Å: Chain A: T.147, A.148, Q.149, R.167, N.169, T.186 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.147 PG4.9: 5 residues within 4Å: Chain A: N.105, G.106, L.107, T.108, S.126 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.36 PG4.10: 4 residues within 4Å: Chain A: R.14, I.56, Q.57, V.58 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.14, A:R.14, A:V.58 PG4.13: 3 residues within 4Å: Chain B: Y.33, Y.47, K.82 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.82 PG4.14: 3 residues within 4Å: Chain B: A.59, K.61, F.66 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.61 PG4.15: 6 residues within 4Å: Chain B: T.147, A.148, Q.149, R.167, N.169, T.186 1 PLIP interactions: 1 interactions with chain B Water bridges: B:T.147 PG4.16: 10 residues within 4Å: Chain A: M.137, K.156, G.157 Chain B: M.137, G.138, V.139, K.156, G.157, V.158 Ligands: PG4.7 No protein-ligand interaction detected (PLIP) PG4.17: 7 residues within 4Å: Chain B: G.27, V.29, K.71, K.96, G.97, V.98 Ligands: PG4.18 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.71 PG4.18: 6 residues within 4Å: Chain B: K.96, G.97, V.98, V.119 Ligands: PG4.7, PG4.17 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative adhesin (BF0245) from Bacteroides fragilis NCTC 9343 at 2.07 A resolution. To be published

Release Date

2011-02-09

Peptides

Putative adhesin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative adhesin

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