SMTL ID : 3pet.3 (2 other biounits)

Crystal structure of a putative adhesin (BF0245) from Bacteroides fragilis NCTC 9343 at 2.07 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: E.162, A.163, G.164, T.182 Ligand excluded by PLIP

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 7 residues within 4Å: Chain A: T.28, V.29, I.52, I.56, I.69, F.78, M.81 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.52, A:I.56, A:F.78 Hydrogen bonds: A:V.29

6 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 3 residues within 4Å: Chain A: Y.33, Y.47, K.82 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.82 PG4.4: 3 residues within 4Å: Chain A: A.59, K.61, F.66 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.61 PG4.5: 6 residues within 4Å: Chain A: T.147, A.148, Q.149, R.167, N.169, T.186 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.147 PG4.6: 6 residues within 4Å: Chain A: M.137, G.138, V.139, K.156, G.157, V.158 No protein-ligand interaction detected (PLIP) PG4.7: 7 residues within 4Å: Chain A: G.27, V.29, K.71, K.96, G.97, V.98 Ligands: PG4.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.71 PG4.8: 5 residues within 4Å: Chain A: K.96, G.97, V.98, V.119 Ligands: PG4.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative adhesin (BF0245) from Bacteroides fragilis NCTC 9343 at 2.07 A resolution. To be published

Release Date

2011-02-09

Peptides

Putative adhesin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Putative adhesin

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