SMTL ID : 3pev.1 (1 other biounit)

S. cerevisiae Dbp5 L327V C-terminal domain bound to Gle1 and IP6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: T.45, K.46 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.46 Water bridges: A:K.47 Salt bridges: A:K.46

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: V.43, A.44, V.95, D.112, L.113, P.114, T.115, R.129 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.43, A:T.115, A:T.115, A:R.129, A:R.129 GOL.4: 6 residues within 4Å: Chain B: I.148, N.170, D.174, T.225, N.226, T.227 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.174, B:N.226, B:T.227 Water bridges: B:T.225 GOL.5: 9 residues within 4Å: Chain B: F.5, I.8, G.143, T.145, R.215, N.218, T.219, P.220, L.223 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.145

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.3: 8 residues within 4Å: Chain A: K.183, K.187 Chain B: K.23, K.92, H.96, R.133, K.136, K.137 23 PLIP interactions: 19 interactions with chain B, 4 interactions with chain A Water bridges: B:R.133, B:R.133, B:R.133, B:R.133, B:K.137, B:K.137 Salt bridges: B:K.23, B:K.92, B:K.92, B:K.92, B:H.96, B:H.96, B:R.133, B:R.133, B:K.136, B:K.136, B:K.136, B:K.137, B:K.160, A:K.183, A:K.183, A:K.183, A:K.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montpetit, B. et al., A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP(6) in mRNA export. Nature (2011)

Release Date

2011-03-23

Peptides

ATP-dependent RNA helicase DBP5: A
Nucleoporin GLE1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ATP-dependent RNA helicase DBP5

Nucleoporin GLE1

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