SMTL ID : 3pho.1

Crystal structure of S64-4 in complex with PSBP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x Z9M- KDO- KDO- KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-8)-3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-4)-3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-6)-2-amino-2-deoxy-4-O-phosphono-beta-D-glucopyranose(Non-covalent)

Z9M-KDO-KDO-KDO.1: 14 residues within 4Å: Chain A: S.31, V.33, N.34, Y.36, L.54, R.96, E.97, R.99 Chain B: Y.33, R.52, N.53, N.56, I.102, G.105 13 PLIP interactions: 5 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:Y.33, B:I.102 Hydrogen bonds: B:Y.33, B:Y.33, A:R.96, A:E.97, A:R.99, A:R.99, A:S.31, A:Y.36, A:Y.36 Salt bridges: B:R.52, A:R.96 Water bridges: A:V.33, A:R.96, A:R.96, A:R.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Evans, D.W. et al., Structural insights into parallel strategies for germline antibody recognition of lipopolysaccharide from Chlamydia. Glycobiology (2011)

Release Date

2011-05-18

Peptides

S64-4 Fab (IgG1) light chain: A
S64-4 Fab (IgG1) heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

S64-4 Fab (IgG1) light chain

S64-4 Fab (IgG1) heavy chain

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