SMTL ID : 3pnw.1 (7 other biounits)

Crystal Structure of the tudor domain of human TDRD3 in complex with an anti-TDRD3 FAB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-1-mer

Ligands

21 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 6 residues within 4Å: Chain A: T.167, E.168, Q.169, D.170, T.175 Chain B: H.180 Ligand excluded by PLIP UNX.2: 5 residues within 4Å: Chain A: N.161, S.162, Q.163, T.181, T.183 Ligand excluded by PLIP UNX.3: 5 residues within 4Å: Chain A: Q.38, Q.39, K.40, K.43, A.44 Ligand excluded by PLIP UNX.4: 3 residues within 4Å: Chain A: N.141, D.170 Chain B: H.180 Ligand excluded by PLIP UNX.5: 2 residues within 4Å: Chain A: Q.158, S.159 Ligand excluded by PLIP UNX.6: 5 residues within 4Å: Chain A: Q.39, G.42, K.43 Chain B: Q.42, Y.98 Ligand excluded by PLIP UNX.7: 4 residues within 4Å: Chain A: K.40, P.41, F.84, A.85 Ligand excluded by PLIP UNX.8: 6 residues within 4Å: Chain A: F.119 Chain B: S.143, S.144, A.152, A.153 Ligands: UNX.18 Ligand excluded by PLIP UNX.9: 5 residues within 4Å: Chain B: S.33, S.34, S.35, S.55, S.57 Ligand excluded by PLIP UNX.10: 5 residues within 4Å: Chain B: L.32, S.35, I.54, S.55, S.56 Ligand excluded by PLIP UNX.11: 4 residues within 4Å: Chain B: L.7, V.8, G.120, Q.121 Ligand excluded by PLIP UNX.12: 3 residues within 4Å: Chain A: T.181 Chain B: V.185, S.193 Ligand excluded by PLIP UNX.13: 2 residues within 4Å: Chain B: T.94, V.127 Ligand excluded by PLIP UNX.14: 2 residues within 4Å: Chain B: K.133, G.134 Ligand excluded by PLIP UNX.15: 2 residues within 4Å: Chain B: L.124, P.165 Ligand excluded by PLIP UNX.16: 3 residues within 4Å: Chain B: P.165, K.217, P.218 Ligand excluded by PLIP UNX.17: 4 residues within 4Å: Chain B: Y.161, E.164, V.166, L.194 Ligand excluded by PLIP UNX.18: 6 residues within 4Å: Chain A: F.121 Chain B: A.141, P.142, S.143, A.153 Ligands: UNX.8 Ligand excluded by PLIP UNX.19: 2 residues within 4Å: Chain B: S.129, S.131 Ligand excluded by PLIP UNX.20: 2 residues within 4Å: Chain C: F.53, N.58 Ligand excluded by PLIP UNX.21: 5 residues within 4Å: Chain C: L.27, Y.28, W.29, E.60, V.62 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Persson, H. et al., CDR-H3 Diversity Is Not Required for Antigen Recognition by Synthetic Antibodies. J.Mol.Biol. (2013)

Release Date

2010-12-01

Peptides

FAB light chain: A
FAB heavy chain: B
Tudor domain-containing protein 3: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

FAB light chain

FAB heavy chain

Tudor domain-containing protein 3

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