SMTL ID : 3pnw.6 (7 other biounits)

Crystal Structure of the tudor domain of human TDRD3 in complex with an anti-TDRD3 FAB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-1-mer

Ligands

20 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 4 residues within 4Å: Chain A: S.124, S.126 Chain B: P.139, K.225 Ligand excluded by PLIP UNX.2: 1 residues within 4Å: Ligands: UNX.3 Ligand excluded by PLIP UNX.3: 3 residues within 4Å: Chain A: F.212, N.213 Ligands: UNX.2 Ligand excluded by PLIP UNX.4: 7 residues within 4Å: Chain A: T.167, E.168, D.170, T.175, Y.176, S.177 Chain B: H.180 Ligand excluded by PLIP UNX.5: 6 residues within 4Å: Chain A: I.3, Q.91, G.93, L.98, F.99, T.100 Ligand excluded by PLIP UNX.6: 5 residues within 4Å: Chain A: Q.158, S.159, N.161, S.162, L.182 Ligand excluded by PLIP UNX.7: 6 residues within 4Å: Chain A: Q.39, K.40, P.41, G.42, K.43 Chain B: Y.98 Ligand excluded by PLIP UNX.8: 3 residues within 4Å: Chain A: S.124 Chain B: P.139, A.141 Ligand excluded by PLIP UNX.9: 4 residues within 4Å: Chain A: A.147, K.148, V.149, E.164 Ligand excluded by PLIP UNX.10: 1 residues within 4Å: Chain A: T.75 Ligand excluded by PLIP UNX.11: 6 residues within 4Å: Chain A: S.13, E.108, I.109, Y.143, Q.169, Y.176 Ligand excluded by PLIP UNX.12: 6 residues within 4Å: Chain B: L.32, S.33, S.35, I.54, S.55, S.56 Ligand excluded by PLIP UNX.13: 2 residues within 4Å: Chain B: A.26, T.81 Ligand excluded by PLIP UNX.14: 4 residues within 4Å: Chain B: S.169, W.170, G.173, L.175 Ligand excluded by PLIP UNX.15: 1 residues within 4Å: Chain B: T.61 Ligand excluded by PLIP UNX.16: 2 residues within 4Å: Chain B: S.60, T.61 Ligand excluded by PLIP UNX.17: 2 residues within 4Å: Chain B: K.46, G.47 Ligand excluded by PLIP UNX.18: 3 residues within 4Å: Chain B: E.164, P.165, V.166 Ligand excluded by PLIP UNX.19: 2 residues within 4Å: Chain A: D.170 Chain B: G.178 Ligand excluded by PLIP UNX.20: 3 residues within 4Å: Chain C: Y.28, F.53, N.58 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Persson, H. et al., CDR-H3 Diversity Is Not Required for Antigen Recognition by Synthetic Antibodies. J.Mol.Biol. (2013)

Release Date

2010-12-01

Peptides

FAB light chain: A
FAB heavy chain: B
Tudor domain-containing protein 3: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
Q

C
R

FAB light chain

FAB heavy chain

Tudor domain-containing protein 3

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