SMTL ID : 3pqa.1

Crystal structure of glyceraldehyde-3-phosphate dehydrogenase GapN from Methanocaldococcus jannaschii DSM 2661

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: H.164, P.165, S.166, S.167, G.199, A.200, G.201 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.167, A:S.167, A:S.167, A:G.201 Water bridges: A:E.202, A:E.202 Salt bridges: A:H.164 SO4.2: 6 residues within 4Å: Chain A: Q.90, K.265, F.268, I.269, L.302, D.313 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.90 SO4.3: 7 residues within 4Å: Chain B: H.164, P.165, S.166, S.167, G.199, A.200, G.201 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.167, B:S.167, B:G.201 Salt bridges: B:H.164 SO4.4: 7 residues within 4Å: Chain C: H.164, P.165, S.166, S.167, G.199, A.200, G.201 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.167, C:S.167, C:G.201 Salt bridges: C:H.164 SO4.5: 6 residues within 4Å: Chain C: Q.90, K.265, F.268, I.269, L.302, D.313 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Q.90 Water bridges: C:D.313, C:D.313, C:D.313 SO4.6: 7 residues within 4Å: Chain D: H.164, P.165, S.166, S.167, G.199, A.200, G.201 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:S.167, D:S.167, D:G.201 Salt bridges: D:H.164 SO4.7: 1 residues within 4Å: Chain D: R.33 2 PLIP interactions: 2 interactions with chain D Water bridges: D:R.33 Salt bridges: D:R.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malashkevich, V.N. et al., Crystal structure of glyceraldehyde-3-phosphate dehydrogenase GapN from Methanocaldococcus jannaschii DSM 2661. To be Published

Release Date

2010-12-15

Peptides

Lactaldehyde dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Lactaldehyde dehydrogenase

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