SMTL ID : 3ptm.1 (1 other biounit)

The crystal structure of rice (Oryza sativa L.) Os4BGlu12 with 2-fluoroglucopyranoside

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x G2F: 2-deoxy-2-fluoro-alpha-D-glucopyranose(Post Translational Modification)

G2F.1: 12 residues within 4Å: Chain A: Q.48, H.152, N.197, E.198, Y.341, W.384, E.412, W.461, E.468, W.469, F.477 Ligands: GOL.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.48, A:H.152, A:Y.341, A:W.469 Water bridges: A:N.466 Halogen bonds: A:N.197

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: D.85, H.88 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.85, A:D.85, A:H.88

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: W.153, E.198, T.201, V.269, H.271, W.384, E.468 Ligands: G2F.1, GOL.6 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.468 GOL.4: 3 residues within 4Å: Chain A: V.82, Y.484, R.488 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.484, A:R.488 Water bridges: A:N.79, A:N.79, A:N.79, A:Y.473 GOL.5: 6 residues within 4Å: Chain A: W.272, F.273, A.286, K.287, I.290, Y.398 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.273 Water bridges: A:F.273 GOL.6: 5 residues within 4Å: Chain A: T.201, N.205, F.212, W.384 Ligands: GOL.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sansenya, S. et al., The crystal structure of rice (Oryza sativa L.) Os4BGlu12, an oligosaccharide and tuberonic acid glucoside-hydrolyzing beta-glucosidase with significant thioglucohydrolase activity. Arch.Biochem.Biophys. (2011)

Release Date

2011-05-18

Peptides

Beta-glucosidase Os4BGlu12: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-glucosidase Os4BGlu12

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